| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 2,076,953 – 2,077,044 |
| Length | 91 |
| Max. P | 0.800624 |
| Location | 2,076,953 – 2,077,044 |
|---|---|
| Length | 91 |
| Sequences | 3 |
| Columns | 91 |
| Reading direction | reverse |
| Mean pairwise identity | 79.70 |
| Mean single sequence MFE | -15.70 |
| Consensus MFE | -11.37 |
| Energy contribution | -11.60 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.74 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.62 |
| SVM RNA-class probability | 0.800624 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2076953 91 - 20766785 AGCCACAAAAGUAGAAAAGUUGAUUAAGAUUUAGGGUAUUUAGGUGGCUGAUUGACACUUGUACUAUAUUUAUAAAGAAUUUAAUUUCAUA ((((((..(((((...(((((......)))))....)))))..))))))...........................(((......)))... ( -12.90) >DroSec_CAF1 61481 84 - 1 AGCCGCAAAAGUAAAAAAAUUGAAGAAGAUUUUGGGUAUUUAAGUGUCUGAAGGACACUUUUACUAUACUUAUAAAGAAUAUAA------- ........(((((..((((((......)))))).((((...(((((((.....))))))).)))).))))).............------- ( -15.60) >DroSim_CAF1 64106 79 - 1 AGCCGCAAAAGUAAAAAAGUUGAAGAAGAUUUUGGGUAUUUAAGUGGCUGAAGGACACUUG-----UACUUAUAACGAGUAUAA------- ((((((..(((((..((((((......))))))...)))))..))))))..........((-----(((((.....))))))).------- ( -18.60) >consensus AGCCGCAAAAGUAAAAAAGUUGAAGAAGAUUUUGGGUAUUUAAGUGGCUGAAGGACACUUGUACUAUACUUAUAAAGAAUAUAA_______ ((((((..(((((..((((((......))))))...)))))..)))))).......................................... (-11.37 = -11.60 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:13 2006