Locus 3139

Sequence ID 2R_DroMel_CAF1
Location 10,725,605 – 10,725,703
Length 98
Max. P 0.775984
window5174

overview

Window 4

Location 10,725,605 – 10,725,703
Length 98
Sequences 6
Columns 107
Reading direction reverse
Mean pairwise identity 80.00
Mean single sequence MFE -19.91
Consensus MFE -11.19
Energy contribution -12.08
Covariance contribution 0.89
Combinations/Pair 1.37
Mean z-score -2.16
Structure conservation index 0.56
SVM decision value 0.54
SVM RNA-class probability 0.775984
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 10725605 98 - 20766785
UAGCUAAAGGCCUUGGUAAAAAACCGAAAGA---------AAAAGAUGAAAAGAUUCCAAUGGUCAUUAAGAAAGAAGAGGAUGAUCUAAGGGGCUUGGAGGAGCUG
(((((..((((((((((.....)))))....---------................((...(((((((............)))))))...))))))).....))))) ( -21.80)
>DroSec_CAF1 62452 98 - 1
CAGCUAAAGGCCUGGGUAAAAAACCGAAAGA---------AAAAGAUGAAAAGAUUCCAAUGGUCAUUAAGAAGGAAGAUGAUGAUAUGAGGGGCUUGGAGGAGCUG
(((((..((((((.(((.....)))......---------..............(((..((.((((((.........)))))).))..))))))))).....))))) ( -21.20)
>DroSim_CAF1 62744 98 - 1
CAGCUAAAGGCCUGGGUAAAAAACCGAAAGA---------AAAAGAUGAAAAGAUUCCAAUGGUCAUUAAGAAGGAAGAUGAUGAUAUGAGGGGCUUGGAGGAGCUG
(((((..((((((.(((.....)))......---------..............(((..((.((((((.........)))))).))..))))))))).....))))) ( -21.20)
>DroEre_CAF1 69296 98 - 1
CAGCAAAAGGACUGAUUAAGAAACCGAAAGA---------GAAAGAUGAAAAGAUUCCAAUGGUUAUCAAGAAGGAAGAGGAUGAUCUAAGGGGCUUGGAGGAGCUA
.(((....................(....).---------..........(((.((((...(((((((............)))))))...)))))))......))). ( -13.90)
>DroYak_CAF1 64215 98 - 1
GAGCUAAGGGCCUGAUCAAAAAACCGAAAGA---------UAAAGAUGAAAAGAUUCCAAUGGUUAUUAAGAAGGAAGAGGAUGAUCUAAGGGGCUUGGAGGAGCUA
.((((..(((((((((((......(....).---------..............((((...............)))).....)))))....)))))).....)))). ( -19.36)
>DroMoj_CAF1 94864 107 - 1
CGGCCAAAGUGCCGGUUAAGAAGCCUAAGGAGACAAAAGAGGAGAAGGAGAAGGUACCUGUGGUUAUCAAAAAGGAGGAAGACGAGCUCAAGGGCCUUGAAGAACUG
.(((((..(((((((((....))))...(....)..................)))))...))))).................((((((....)).))))........ ( -22.00)
>consensus
CAGCUAAAGGCCUGGGUAAAAAACCGAAAGA_________AAAAGAUGAAAAGAUUCCAAUGGUCAUUAAGAAGGAAGAGGAUGAUCUAAGGGGCUUGGAGGAGCUG
(((((..((((((...........(....)...............................(((((((............)))))))....)))))).....))))) (-11.19 = -12.08 +   0.89)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:26 2006