| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 10,715,397 – 10,715,491 |
| Length | 94 |
| Max. P | 0.524264 |
| Location | 10,715,397 – 10,715,491 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 80.70 |
| Mean single sequence MFE | -17.53 |
| Consensus MFE | -11.19 |
| Energy contribution | -11.55 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.44 |
| Structure conservation index | 0.64 |
| SVM decision value | -0.02 |
| SVM RNA-class probability | 0.524264 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10715397 94 - 20766785 UUACCGCAAAUAACUUU-----UUAUUUUCUUUUCAGUUUCCGAUAAAUGGGUCCGAAUUCUGACCACAUUCUGUUGGUUCAUCUUUAUAUAUGGGCUU ...(((.((((((....-----)))))).)......(...((((((((((((((.(....).)))).)))).))))))..)............)).... ( -16.40) >DroSec_CAF1 52226 94 - 1 UAACCCCACAUAACGUU-----AUAUUUUCUUUUUAGUUUCCGAUAAAUGGGUCCGAAUUCUGACCACAUUCUGUUGGUUCAUCUUUAUAUAUGGGCUG ....((((.(((.....-----.......((....))...((((((((((((((.(....).)))).)))).))))))..........))).))))... ( -17.90) >DroSim_CAF1 52448 94 - 1 UUACCCCACAUAACUUU-----AUAUUUUCUUUUUAGUUUCCGAUAAAUGGGUCCGAAUUCUGACCACAUUCUGUUGGUUCAUCUUUAUAUAUGGGCUG ....((((.((((((..-----.............)))..((((((((((((((.(....).)))).)))).))))))..........))).))))... ( -17.96) >DroEre_CAF1 58931 94 - 1 UUACCCCACAUAACUUU-----AUCUAUUCUCUUUAGUUUCCGAUAGAUGGGUCCGAAUUCUCACCACAAUCUGUUGGUUCGUCUUUCUCUAUGGACUU .................-----..............(...(((((((((.(((..(....)..)))...)))))))))..)((((........)))).. ( -17.10) >DroYak_CAF1 53927 92 - 1 U--CCUCACAUAACUUG-----AUCUUUGCUUUUUAGUUUCCGAUAGAUGGGUCCGAAUUCUGACCACAUUCUGUUGGUUCGUCUUUCUCUACGGCCUU .--..............-----......((..........((((((((((((((.(....).)))).)).))))))))..(((........)))))... ( -17.70) >DroAna_CAF1 52070 91 - 1 UCA--------AACUUGUAAGUGUCUUUCUUCUGCAGUCUCCGACAGAUGUGUCAGAAUUCUGACCACACUCUCUUGGUUCGUUUUCCUCUACGGCCUG ...--------.....(..(((((......((((..(....)..)))).(.(((((....)))))))))))..)..(((.(((........)))))).. ( -18.10) >consensus UUACCCCACAUAACUUU_____AUAUUUUCUUUUUAGUUUCCGAUAAAUGGGUCCGAAUUCUGACCACAUUCUGUUGGUUCAUCUUUAUAUAUGGGCUG .........................................(((((((((((((.(....).)))).)))).)))))((((((........)))))).. (-11.19 = -11.55 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:24 2006