Locus 3136

Sequence ID 2R_DroMel_CAF1
Location 10,709,561 – 10,709,659
Length 98
Max. P 0.999873
window5171

overview

Window 1

Location 10,709,561 – 10,709,659
Length 98
Sequences 5
Columns 98
Reading direction reverse
Mean pairwise identity 95.31
Mean single sequence MFE -19.82
Consensus MFE -17.80
Energy contribution -17.52
Covariance contribution -0.28
Combinations/Pair 1.21
Mean z-score -3.07
Structure conservation index 0.90
SVM decision value 4.33
SVM RNA-class probability 0.999873
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 10709561 98 - 20766785
AACCCAAUUUUAUCAACUAUUCCAAUCAUUUUACCAUUUAUUGGCCGCAGGCCCAGCUAACGUGUUUGUGGCCAAAUUUUCAUUUUACCCUCUUCGAU
........................................((((((((((((...((....))))))))))))))....................... ( -19.80)
>DroSec_CAF1 46396 98 - 1
AACCCAAUUUUAGCAACUAUUCCAAUCAUUUUACCAUUUAUUGGCCGCAGGCCCAGCUAACGUGUUUGUGGUCAAAUUUUUAUUUUACCCUCUUCGAU
........................................((((((((((((...((....))))))))))))))....................... ( -17.10)
>DroSim_CAF1 46585 98 - 1
AACCCAAUUUUAUCAACUAUUCCAAUCAUUUUACCAUUUAUUGGCCGCAGGCCCAGCUAACGUGUUUGUGGCCAAAUUUUCAUUUUACCCUCUUCGAU
........................................((((((((((((...((....))))))))))))))....................... ( -19.80)
>DroEre_CAF1 53052 97 - 1
AACCCAAUUUUAUCAACUAUUCCAAACAUUCUACCAUUUAUUGGCUGCAGGCCCAGUUAACGGGUUUGUGGCCAAAUUUUCAUUUUU-CCUCUUCGAU
........................................(((((..(((((((.......)))))))..)))))............-.......... ( -22.60)
>DroYak_CAF1 48032 98 - 1
AACCCAAUUUUAUCAACUAUUGCAAUCAUUCUACCAUUUAUUGGCCGCAGGCCCAGCUAACGUGUUUGUGGCCAAAUUUUCAUUUUACCCUCUUCGAU
........................................((((((((((((...((....))))))))))))))....................... ( -19.80)
>consensus
AACCCAAUUUUAUCAACUAUUCCAAUCAUUUUACCAUUUAUUGGCCGCAGGCCCAGCUAACGUGUUUGUGGCCAAAUUUUCAUUUUACCCUCUUCGAU
........................................((((((((((((...((....))))))))))))))....................... (-17.80 = -17.52 +  -0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:23 2006