| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 10,694,879 – 10,694,984 |
| Length | 105 |
| Max. P | 0.936487 |
| Location | 10,694,879 – 10,694,984 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 78.63 |
| Mean single sequence MFE | -34.49 |
| Consensus MFE | -27.19 |
| Energy contribution | -28.18 |
| Covariance contribution | 0.99 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.85 |
| Structure conservation index | 0.79 |
| SVM decision value | 1.25 |
| SVM RNA-class probability | 0.936487 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10694879 105 + 20766785 AACUCCUCUGGCAGGGGGCCAAAAACGAAAAAAAAAAUGCAGGAACUCGCUCUGCUCGAUUCAAAAUCGAUUGAGUGGCUCA---GGGGGCGGCUAUUUGGCCAGGGG ....((((((((....((((...........................(((((...(((((.....)))))..)))))(((..---...))))))).....)))))))) ( -36.50) >DroPse_CAF1 34104 83 + 1 AA------UGGCAGGGGGCCAGA-----------AAUUCGGAGCAUUCCUUCAGCUCCGGUCGAAAUCGAUUGAACAGCCCC---GGGGGC---UGGGUGGCUGGA-- ..------((((.....))))..-----------.....((......))((((((((((((((....)))))...((((((.---..))))---)))).)))))))-- ( -30.90) >DroSec_CAF1 31804 100 + 1 AACUCCUCUGGCAGGGGGCCAAAAACGAAA----AAUUGCAGGAACUUGCUCAGCUCGAUUCAAAAUCGAUUGAGUGGCUCA---GGGGGUGGCUAUUUGGCUAGGG- ...(((((((((.(((..((..........----.......))..)))((((((.(((((.....))))))))))).)).))---)))))(((((....)))))...- ( -30.23) >DroSim_CAF1 31670 100 + 1 AACUCCUCUGGCAGGGGGCCAAAAACGAAA----AAUUGCAGGAACUCGCUCAGCUCGAUUCAAAAUCGAUUGAGUGGCUCA---GGGGGCGGCUAUUUGGCCAGGG- .....(((((((....((((..........----.............(((((((.(((((.....))))))))))))(((..---...))))))).....)))))))- ( -36.00) >DroEre_CAF1 32002 100 + 1 AACUCCUCUGGCUGGUGGCCAAAAACGAAA----AAUGGCGAAAACUCGCUCAGCUCGAUUCAAAAUCGAUUGAGUGGCUCG---GGGGGCGGCUAUUUGGCCGGGG- .....(((((((..((((((..........----.............(((((((.(((((.....))))))))))))(((..---...)))))))).)..)))))))- ( -38.80) >DroYak_CAF1 33106 104 + 1 AACUCCUCUGGCUGAGGGCCAAAAACGAAA----AAUUGCAAGAAUUCGCUCAGCUCGAAUCAAAAUCGAUUGAGUGGCACGAAGGGGGGCGACUAUUUGGCCAGGGG ....((((((((..((.(((..........----............((((((((.((((.......))))))))))))..(....)..))).....))..)))))))) ( -34.50) >consensus AACUCCUCUGGCAGGGGGCCAAAAACGAAA____AAUUGCAAGAACUCGCUCAGCUCGAUUCAAAAUCGAUUGAGUGGCUCA___GGGGGCGGCUAUUUGGCCAGGG_ .....(((((((....((((...........................(((((((.(((((.....))))))))))))((((......)))))))).....))))))). (-27.19 = -28.18 + 0.99)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:22 2006