| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 10,690,439 – 10,690,553 |
| Length | 114 |
| Max. P | 0.570848 |
| Location | 10,690,439 – 10,690,553 |
|---|---|
| Length | 114 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 81.99 |
| Mean single sequence MFE | -26.05 |
| Consensus MFE | -13.83 |
| Energy contribution | -15.25 |
| Covariance contribution | 1.42 |
| Combinations/Pair | 1.22 |
| Mean z-score | -2.42 |
| Structure conservation index | 0.53 |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.570848 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10690439 114 - 20766785 UCACAGUCGAAAAAUCUGCAUAGCUGUGGAAAACCACUAAUUGGAAAUACAAUUAGCUGCCAUGGUUGAAGAAAAGUUUCAAAUUCAAUUUACGAAUGUCUAAACUUUUCCUUU .....((.((....)).)).(((((((((.......(((((((......)))))))...)))))))))..(((((((((...((((.......))))....))))))))).... ( -24.90) >DroPse_CAF1 29642 105 - 1 UCAUUGGAGUUGGAGCUGCA-----AUUGGAAGCUCCUCGUUUGAAAUUUAAUUAGUUUCAAUGGCUGUGGAA-AGUUUUCAAUUAAAUUAACACAACUUUGAUGUUUU---UU .(((..((((((.......(-----((((((((((((.((.((((((((.....))))))))....)).))).-.)))))))))).........))))))..)))....---.. ( -28.09) >DroSec_CAF1 27452 114 - 1 UCACAGUCGGAAAAUCUGCAUCGCUGUGGAAAACCACUAAUUGGAAAUACAAUUAGCUGCCAUGGUUGAAGAAAAGUUUCCAAUUCAAUUUACGAAUGUCUAAACUUUUCCUUU ((((((((((.....)))....)))))))..((((((((((((......)))))))......)))))...(((((((((...((((.......))))....))))))))).... ( -27.40) >DroSim_CAF1 27299 114 - 1 UCACAGUCGGAAAAUCUGCAUCGCUGUGGAAAACCACUAAUUGGAAAUACAAUUAGCUGCCAUGGUUGAAGAAAAGUUUCAAAUUCAAUUUACGAAUGUCUAAACUUUUCCUUU ((((((((((.....)))....)))))))..((((((((((((......)))))))......)))))...(((((((((...((((.......))))....))))))))).... ( -27.40) >DroEre_CAF1 27601 114 - 1 UCACAGUCAGAAAAUCUGCAUGGCUGUGGAAAACCACUAAUUGGAAAUUCAAUUAGCUGCCGUAGUUGAAGAAAAGUUUCAAAUUAAUUUUACAAUUGUCUAAACUUUUCCCUU (((((((((...........)))))))))....(((.....)))...((((((((.......))))))))(((((((((.....(((((....)))))...))))))))).... ( -23.60) >DroYak_CAF1 28739 114 - 1 UCACAGUCGCAAAAUCUGCAUCGCUAUGGAAAACCACUAAUUGGAAAUACAAUUAGCCGCCAUAGUUGGAGAAAAGUUUCAAAUUCAAUUUACGAUUGUCUAAACUUUUCCUUU ..(((((((.....(((.((..(((((((.......(((((((......)))))))...))))))))).))).(((((........))))).)))))))............... ( -24.90) >consensus UCACAGUCGGAAAAUCUGCAUCGCUGUGGAAAACCACUAAUUGGAAAUACAAUUAGCUGCCAUGGUUGAAGAAAAGUUUCAAAUUCAAUUUACGAAUGUCUAAACUUUUCCUUU ......................(((((((.......(((((((......)))))))...)))))))....(((((((((...((((.......))))....))))))))).... (-13.83 = -15.25 + 1.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:18 2006