| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 10,679,687 – 10,679,785 |
| Length | 98 |
| Max. P | 0.859810 |
| Location | 10,679,687 – 10,679,785 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 77.28 |
| Mean single sequence MFE | -29.08 |
| Consensus MFE | -14.82 |
| Energy contribution | -16.97 |
| Covariance contribution | 2.14 |
| Combinations/Pair | 1.28 |
| Mean z-score | -2.16 |
| Structure conservation index | 0.51 |
| SVM decision value | 0.82 |
| SVM RNA-class probability | 0.859810 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10679687 98 + 20766785 CCAAAGGCAA---CAU--CGGA------AGCCGAUGUCGGCCACCCGAAUGGUUAACAGGGCCACAAGAAUCACGUUUUUAACCAAACCCACUGGCCAAACGAGGCCAG .....(((.(---(((--(((.------..)))))))..))).......(((((((.((.(............).)).)))))))......((((((......)))))) ( -30.40) >DroVir_CAF1 28923 88 + 1 CAAAA--CAU---CACUC---------------CAUUCGGGCACCCGAAUGUUGGGCAGAGCGAACAGAGACGCU-UUUUAACCAAACCUAGGGAACAAACGAGGCCAG .....--...---..(((---------------(((((((....)))))))((((..((((((........))))-))....))))...............)))..... ( -22.70) >DroSec_CAF1 16557 98 + 1 CCAAAGGCAA---CAU--CGGC------AGCCGAUGUCGGCCACCCGAACGGUUAACAGGGCCACAAGAAUCACGUUUUUAACCAAACCCACUGGCCAAACGAGGCCAG ..((((((.(---(((--(((.------..))))))).(((((((.....)))......))))...........))))))...........((((((......)))))) ( -29.70) >DroSim_CAF1 16195 98 + 1 CCAAAGGCAA---CAU--CGGC------AGCCGAUGUCGGCCACCCGAACGGUUAACAGGGCCACAAGAAUCACGUUUUUAACCAAACCCACUGGCCAAACGAGGCCAG ..((((((.(---(((--(((.------..))))))).(((((((.....)))......))))...........))))))...........((((((......)))))) ( -29.70) >DroEre_CAF1 16723 89 + 1 CC------------AU--CGGC------AGCCGAAGUCGGCCAGCCGAACGGUUAACAGGGCCACAAGAAUCACGUUUUUAACCAAACCCACUGGCCAAACGAGGCCAG ..------------.(--((((------.((((....))))..)))))..((((((.((.(............).)).)))))).......((((((......)))))) ( -31.30) >DroAna_CAF1 16253 107 + 1 CCAAAGACAACAACAU--CGGUUAGCUCGGUUGGUUCGGGCCACCCGAACGGUUAACAGGGCCAAAAGAAGCACGUUUUUAACCAACCCCACAGGCCAAACGAGGCCAG ................--.((((((..(((((.(((((((...)))))))((((.....))))......))).))...)))))).........((((......)))).. ( -30.70) >consensus CCAAAGGCAA___CAU__CGGC______AGCCGAUGUCGGCCACCCGAACGGUUAACAGGGCCACAAGAAUCACGUUUUUAACCAAACCCACUGGCCAAACGAGGCCAG ...................(((......(((((...((((....)))).)))))......)))............................((((((......)))))) (-14.82 = -16.97 + 2.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:10 2006