| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 10,679,214 – 10,679,309 |
| Length | 95 |
| Max. P | 0.798969 |
| Location | 10,679,214 – 10,679,309 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 78.77 |
| Mean single sequence MFE | -11.72 |
| Consensus MFE | -7.16 |
| Energy contribution | -7.52 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.61 |
| SVM decision value | 0.61 |
| SVM RNA-class probability | 0.798969 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10679214 95 + 20766785 AUUUCUUAU-AAAUACUUUAAGCUGGCAACACUUUUUCUAAUCGA-AAAGCUUUUAUAAAAGCUUUUGCUCCUUUCCAUAAC--UUACCAUAACUAA-CA .........-..........(((((....)).............(-((((((((....))))))))))))............--.............-.. ( -10.90) >DroPse_CAF1 18429 98 + 1 AUUCAAAAU-UUA-UCUUCUAGCUGGCAACACUUUUCCGAAGCGAGAAAGCUCCCGUGAAAGCUUUCGCUCUCUCACCUACUCUCUUCCAUAACUAACCA .........-...-.((((.((.((....)))).....)))).((((.(((....((....))....))).))))......................... ( -13.90) >DroSec_CAF1 16083 96 + 1 UUUUCUAAAAAAAUAUUUUAAGCUGGCAACAUUUUUUCUAAACGA-AAAGCUUUUAUAAAAGCUUUUGCUCCUUUCCAUAAC--UUACCAUAACUAA-CA ....................(((((....)).............(-((((((((....))))))))))))............--.............-.. ( -11.00) >DroSim_CAF1 15722 95 + 1 AUUUCUAAU-AAAUAUUUUAAGCUGGCAACACUUUUUCUAACCGA-AAAGCUUUUAUAAAAGCUUUUGCUCCUUUCCAUAAC--UUUCCAUAACUAA-CA .........-..........(((((....)).............(-((((((((....))))))))))))............--.............-.. ( -10.90) >DroEre_CAF1 16252 94 + 1 AUUUCUAAU-AAAUACUUUUAGCUGGCAACACUUUUUCUAACCGA-AAAGCUUUUCCA-AAGCUUGAGUUCCUUUCCAUAAC--UUACCAUAACUAA-CA .........-....((((..((((((.((..((((((......))-))))..)).)).-.)))).)))).............--.............-.. ( -9.30) >DroPer_CAF1 18493 98 + 1 AUUCAAAAU-UUA-ACUUCUAGCUGGCAACACUUUUCCGAAGCGAGAAAGCUCCCGUGAAAGCUUUCGCUCUCUCACCUACUCUCUUCCAUAACUAACCA .........-...-.((((.((.((....)))).....)))).((((.(((....((....))....))).))))......................... ( -14.30) >consensus AUUUCUAAU_AAAUACUUUAAGCUGGCAACACUUUUUCUAACCGA_AAAGCUUUUAUAAAAGCUUUUGCUCCUUUCCAUAAC__UUACCAUAACUAA_CA ....................(((((....))...............(((((((......))))))).))).............................. ( -7.16 = -7.52 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:09 2006