Locus 3125

Sequence ID 2R_DroMel_CAF1
Location 10,672,567 – 10,672,669
Length 102
Max. P 0.930100
window5156

overview

Window 6

Location 10,672,567 – 10,672,669
Length 102
Sequences 5
Columns 102
Reading direction reverse
Mean pairwise identity 93.82
Mean single sequence MFE -18.50
Consensus MFE -16.84
Energy contribution -16.48
Covariance contribution -0.36
Combinations/Pair 1.17
Mean z-score -1.44
Structure conservation index 0.91
SVM decision value 1.20
SVM RNA-class probability 0.930100
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 10672567 102 - 20766785
AUUUCAAGGCAAAUGUUACGAGGAAAACCAAGUGAGCAGCACACAUAAACCAGCAAAUUAAAAGCUGUUGGCAGCGGGAAAAUUGCUAAGCAAUAAUAAUAA
........((...((((((..((....))..)))).)).............(((((.......((((....)))).......)))))..))........... ( -17.24)
>DroSec_CAF1 9450 102 - 1
AUUUCAAGGCAAAUGUUACGAGGGAAACCAAGGGAACAGCACACAUAAACCAGCAAAUUAAAAGCUGUUGGCAGCGGGAAAAUUGCUAAGCAAUAACAAUAA
........((...((((.(..((....))..)..)))).............(((((.......((((....)))).......)))))..))........... ( -20.54)
>DroSim_CAF1 9528 102 - 1
AUUUCAAGGCAAAUGUUACGAGGAAAACCAAGUGAACAGCACACAUAAACCAGCAAAUUAAAAGCUGUUGGCAGCGGGAAAAUUGCUAAGCAAUAACAAUAA
........((...((((((..((....))..))).))).............(((((.......((((....)))).......)))))..))........... ( -17.24)
>DroEre_CAF1 9519 102 - 1
AUUUUUGGGCAAAUGUUACGAGGAAAACCAAGUGAGCAGCACACAUAAACCAUCAAAUUAAAAGCUGUUGGCAGUGGGAAAAUUGCUUGGCAAUAAUAAUAA
(((.(..(((((.(.((((..((....))..((.((((((.......................)))))).)).)))).)...)))))..).)))........ ( -19.50)
>DroYak_CAF1 9733 102 - 1
AUUUCAAAGCAAAUGUUACGAGGAAAACCAAGUGAACAGCACACAUAAACCAACAAAUUAGAAGCUGUUGGCAGCGGGAAAAUUGCUAAGCAAUAAUUAUAA
.((((...((...........((....))..((.((((((.......................)))))).)).))..))))(((((...)))))........ ( -18.00)
>consensus
AUUUCAAGGCAAAUGUUACGAGGAAAACCAAGUGAACAGCACACAUAAACCAGCAAAUUAAAAGCUGUUGGCAGCGGGAAAAUUGCUAAGCAAUAAUAAUAA
.......(((((...(..((.((....))..((.((((((.......................)))))).))..))..)...)))))............... (-16.84 = -16.48 +  -0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:08 2006