| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 10,666,800 – 10,666,896 |
| Length | 96 |
| Max. P | 0.718433 |
| Location | 10,666,800 – 10,666,896 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 76.10 |
| Mean single sequence MFE | -27.67 |
| Consensus MFE | -15.19 |
| Energy contribution | -15.38 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.55 |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.718433 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10666800 96 + 20766785 -AAACCGAUUCGAUGCGAUCCGCCAGCCCCUCUUGGCCAACUAUUGUCUGCUCAUAUUCCCGGUUAAUAUUGGCUUGGCACUUGGCCAA-------GAGCUG-AG -....((..(((...)))..)).((((...((((((((((....((((.(((.(((((.......))))).)))..)))).))))))))-------))))))-.. ( -29.80) >DroPse_CAF1 5478 92 + 1 -ACAGAGAUAU------AGCCCUUAU--CCCCUUAGCCAUCUAUUGUCUGCUCAUAUUGCCGGUUAAUAUUGGCUUGGCAUGCAGCCAGCCA----GAGCGACAG -.....((((.------......)))--)...............((((.((((((((((.....))))))(((((.(((.....))))))))----)))))))). ( -24.20) >DroEre_CAF1 3569 96 + 1 -AAACCGAUUCGAUGCGAUCCGCCAGCCCCUCUUGGCCAACUAUUGUCUGCUCAUAUUCCCUGUUAAUAUUGGCUUGGCAUUUGGCCAA-------GAGCUG-AG -....((..(((...)))..)).((((...((((((((((....((((.(((.(((((.......))))).)))..)))).))))))))-------))))))-.. ( -30.50) >DroYak_CAF1 3850 96 + 1 -AAACCGAUUCGAUGCGAUCCGCCAGCCCCUCUUGGCCAACUACUGUCUGCUCAUAUUCCCGGCUAAUAUUGGCUUGGCAUUUGGCCAA-------GAGCUG-AG -....((..(((...)))..)).((((...((((((((((....((((.(((.(((((.......))))).)))..)))).))))))))-------))))))-.. ( -29.80) >DroAna_CAF1 3928 100 + 1 CAAACCUAUCCGAUUCG--CAGCCAACUC--CUUGGCCAUCUAUUGUCUGCUCAUAUUGCCGUUUAAUAUUGGCUUGGCAUGUGGCCAAAAAAAAGGAGCUG-AA .................--((((....((--(((((((((....((((.(((.((((((.....)))))).)))..)))).)))))))......))))))))-.. ( -27.50) >DroPer_CAF1 5442 92 + 1 -ACAGAGAUAU------AGCCCUUAU--CCCCUUAGCCAUCUAUUGUCUGCUCAUAUUGCCGGUUAAUAUUGGCUUGGCAUGCAGCCAGCCA----GAGCGACAG -.....((((.------......)))--)...............((((.((((((((((.....))))))(((((.(((.....))))))))----)))))))). ( -24.20) >consensus _AAACCGAUUCGAUGCGAUCCGCCAGCCCCUCUUGGCCAACUAUUGUCUGCUCAUAUUCCCGGUUAAUAUUGGCUUGGCAUGUGGCCAA_______GAGCUG_AG .....................(((((......)))))............((((......(((((....))))).(((((.....))))).......))))..... (-15.19 = -15.38 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:04 2006