Locus 3120

Sequence ID 2R_DroMel_CAF1
Location 10,662,828 – 10,662,924
Length 96
Max. P 0.529175
window5149

overview

Window 9

Location 10,662,828 – 10,662,924
Length 96
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 60.59
Mean single sequence MFE -25.36
Consensus MFE -12.72
Energy contribution -12.08
Covariance contribution -0.64
Combinations/Pair 1.44
Mean z-score -1.31
Structure conservation index 0.50
SVM decision value -0.01
SVM RNA-class probability 0.529175
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 10662828 96 - 20766785
GUAUUUUAUAGCCAUUUUGGUAUAGUCGGGCUGCGUGCGUAACACAUUACGUGGAUGCAUGCCGACUAUCUUUUGGUUUCCCUUAGUUUUUACCAU------------------------
.........(((((....((.((((((((.((((((((((((....))))))..))))).)))))))))))..)))))..................------------------------ ( -27.00)
>DroVir_CAF1 1 90 - 1
GUGCUUGAUGGCCAAUUUUGUGUAGUCCGGCGCAGUGCGCAGCACAUUGCGCGGAUGCAUAGCA--GAC----UUUUUAUUGCUAUGCUUCACCAU------------------------
(((((.(((.((((....)).)).))).)))))..(((((((....)))))))((.((((((((--(..----......))))))))).)).....------------------------ ( -32.50)
>DroPse_CAF1 1 114 - 1
GUAUUUUAUGGCCAACUUGGUGUAGUCGGGCGGCACGCGCAGAAUAUUGCGCGGAUGCAUGGCA--UAC----UUGUUCUUUUUAUUUCUGACCAUUUCAAUUUUUUUGGUUUGUUUAUU
.........((((((.((((.((.((((((((...(((((((....)))))))..)))..((((--...----.))))..........))))).)).)))).....))))))........ ( -26.30)
>DroWil_CAF1 1 84 - 1
GUAUUUAAUGGCCAAUUUUGUGUAGUCAGGUGGUGAGCGCAGCACAUUGCGAGGGUGCAUUUGA------------UUUUUCUUAGAUCUAACCAU------------------------
..((((((.((..((((..(((((.((..(..(((.((...)).)))..)..)).)))))..))------------))..))))))))........------------------------ ( -17.10)
>DroPer_CAF1 1 75 - 1
GUAUUUGAUGGCCAACUUGGUGUAGUCGGGCGGCACGCGCAGAAUAUUGCGCGGAUGCAUGGCA--UAC----UUGUUCAU---------------------------------------
.......(((..((....(((((.((((.(((...(((((((....)))))))..))).)))))--)))----)))..)))--------------------------------------- ( -23.90)
>consensus
GUAUUUGAUGGCCAAUUUGGUGUAGUCGGGCGGCGCGCGCAGCACAUUGCGCGGAUGCAUGGCA__UAC____UUGUUCUUCUUAGUUCU_ACCAU________________________
(((((.....(((.(((......)))..)))....(((((((....)))))))))))).............................................................. (-12.72 = -12.08 +  -0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:02 2006