Locus 3115

Sequence ID 2R_DroMel_CAF1
Location 10,654,544 – 10,654,637
Length 93
Max. P 0.822017
window5141

overview

Window 1

Location 10,654,544 – 10,654,637
Length 93
Sequences 6
Columns 105
Reading direction reverse
Mean pairwise identity 76.75
Mean single sequence MFE -41.06
Consensus MFE -25.05
Energy contribution -25.16
Covariance contribution 0.11
Combinations/Pair 1.16
Mean z-score -1.67
Structure conservation index 0.61
SVM decision value 0.68
SVM RNA-class probability 0.822017
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 10654544 93 - 20766785
ACCGGCUGUUG------------CAUAACGCCCACGUGAAGGGGCAAUACCACACCGGCGCCAUCGUCCAUUUUCUCCUGCUUAAGCUGGGCCAGCGGCAUGUCG
..(((((((((------------(.....((((.(.....)))))...........(((.(((.(....................).)))))).)))))).)))) ( -27.75)
>DroVir_CAF1 135039 99 - 1
ACCGGCUGUUGAGCGCUGUUCAUGACCGCGCCCACAUGCAGCGGCAGCAC------AGAGCCAUCGUCCAGUUUCUCCUGCUUGAGCUGGGCCAGCGGCAUGUCG
....(((((((.((.((((...((.((((((......)).))))))..))------)).))....((((((((.(........))))))))))))))))...... ( -37.80)
>DroPse_CAF1 113199 99 - 1
ACCGGCUGCUGGGCGUUGUUCAUCACAACGCCCACAUGGAGGGGCAGGAC---A---CUGCCAUCGUCCAGCUUCUCCUGCUUGAGCUGGGCCAGCGGCAUCUCG
....(((((((((((((((.....))))))))).....((..(((((...---.---))))).))((((((((.(........))))))))).))))))...... ( -49.30)
>DroMoj_CAF1 156253 99 - 1
ACCGGCUGCUGGGCGCUGUUCAUCACGGCGGCCACAUGCAGCGGCAGCAC------UGAGCCAUCGUCCAGCUUCUCCUGCUUCAGCUGGGCGAGCGGCAUGUCC
...((((((((..............))))))))((((((.(((((.....------...))).((((((((((...........)))))))))))).)))))).. ( -46.24)
>DroAna_CAF1 122455 87 - 1
ACGGGCUGUUG------------CAUGA------CGUGGAGGGGCAGGACUCCGCCACCGCCAUCGUCCAGCUUCUCCUGCUUGAGCUGGGCCAGCGGCAUGUCG
...((((((((------------(....------.((((.(((((.((...))))).)).)))).((((((((.(........)))))))))..)))))).))). ( -36.80)
>DroPer_CAF1 114480 99 - 1
ACCGGCUGCUGGGCGUUGUUCAUCACAACGCCCACAUGGAGGGGCAGGAC---A---CUGCCAUCGUCCAGCUUCUCCUGCUUUAGCUGGGCCAGCGGCAUCUCG
....(((((((((((((((.....))))))))).....((..(((((...---.---))))).))((((((((...........)))))))).))))))...... ( -48.50)
>consensus
ACCGGCUGCUGGGCG_UGUUCAUCACAACGCCCACAUGGAGGGGCAGGAC___A___CAGCCAUCGUCCAGCUUCUCCUGCUUGAGCUGGGCCAGCGGCAUGUCG
....(((((((...............................(((..............)))...(((((((((.........))))))))))))))))...... (-25.05 = -25.16 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:54 2006