Locus 3103

Sequence ID 2R_DroMel_CAF1
Location 10,611,945 – 10,612,050
Length 105
Max. P 0.705612
window5120

overview

Window 0

Location 10,611,945 – 10,612,050
Length 105
Sequences 6
Columns 112
Reading direction reverse
Mean pairwise identity 82.28
Mean single sequence MFE -23.17
Consensus MFE -16.42
Energy contribution -17.25
Covariance contribution 0.83
Combinations/Pair 1.12
Mean z-score -1.85
Structure conservation index 0.71
SVM decision value 0.36
SVM RNA-class probability 0.705612
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 10611945 105 - 20766785
------CGACUGUUAACCCGAAAAUAGUCAAGCUGGAAUCAUAUCAAGCAAUUUGCAAGCCAAACAUCACGAUGUGCUUCUGGUGUCC-UUCCACAGCCACAGCCAUCGUCA
------.(((((((........)))))))..(((.((......)).)))...................((((((.(((..((((((..-....))).))).))))))))).. ( -25.00)
>DroSec_CAF1 53972 105 - 1
------CGACUGUUAACCCGAAAACAGUCAAGCUGGAAUCAUAUCAAGCAAUUUGCAAGCCAAACAUCACGAUGUGCUUCUGGCGUCC-UUCCACAGCCACAGCCAUCGUCA
------.(((((((........)))))))..(((.((......)).)))...................((((((.(((..((((....-.......)))).))))))))).. ( -28.50)
>DroSim_CAF1 53237 105 - 1
------CGACUGUUAACCCAAAAACAGUCAAGCUGGAAUCAUAUCAAGCAAUUUGCAAGCCAAACAUCACGAUGUGCUUCUGGUGUCC-UUCCACAGCCACAGCCAUCGUCA
------.(((((((........)))))))..(((.((......)).)))...................((((((.(((..((((((..-....))).))).))))))))).. ( -26.90)
>DroEre_CAF1 52841 104 - 1
------CGACUGUUAACCCGAAAACAGACAAGCUGGAAUCAUAUCAAGCAAUUUGCAAUCCAAACAUCACGAUGUGCUUCCGGUGACCC-UCCAC-UCCACCAUCAUCGUCA
------((((((((........)))))....(((((((.((((((......((((.....))))......)))))).))))))).....-.....-..........)))... ( -20.50)
>DroYak_CAF1 61177 106 - 1
------CGACUGUUAGCCCGAAAACAGUCAAGCUGGAAUCAUAUCCAGCAAUUUGCAAUCCAAACAUCACGAUGUGCUACUGGUGCUCCUUCCACAACCACCAUCAUGGUCA
------.(((((((........)))))))..((((((......))))))................((((.((((((....(((........)))....)).)))).)))).. ( -27.10)
>DroAna_CAF1 88334 91 - 1
UGGGAACAACUGUUAACCCGAAAACUGUCAAGUUGAAAUCAUAUCAAGCAAUUUGCAAGCCAAACAUCG---UGUGCUUCCG-UAUCC-UUCUCCG----------------
.((((((....)))..)))(((....(.(((((((.............))))))))((((((.......---)).))))...-.....-)))....---------------- ( -11.02)
>consensus
______CGACUGUUAACCCGAAAACAGUCAAGCUGGAAUCAUAUCAAGCAAUUUGCAAGCCAAACAUCACGAUGUGCUUCUGGUGUCC_UUCCACAGCCACAGCCAUCGUCA
.......(((((((........)))))))..(((((((.((((((......((((.....))))......)))))).)))))))............................ (-16.42 = -17.25 +   0.83)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:35 2006