| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 1,221,367 – 1,221,463 |
| Length | 96 |
| Max. P | 0.513381 |
| Location | 1,221,367 – 1,221,463 |
|---|---|
| Length | 96 |
| Sequences | 4 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 77.60 |
| Mean single sequence MFE | -19.43 |
| Consensus MFE | -14.22 |
| Energy contribution | -13.97 |
| Covariance contribution | -0.25 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.43 |
| Structure conservation index | 0.73 |
| SVM decision value | -0.04 |
| SVM RNA-class probability | 0.513381 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1221367 96 - 20766785 --GACCACAUAGUGACGAACAGCACCCAGAGGGUGUGCGAAGGUUAAAACUAUAACAAAAAAAAAAAAACAUGAAAAAAUUAUGGUC-GUGAUCGUCCG --.........(.(((((.(.((((((...))))))((((..((((......)))).............(((((.....))))).))-))).)))))). ( -21.60) >DroSec_CAF1 24594 84 - 1 --GUCCACAUAGUGACGAACAGCACCCACAGGGCGUGCGGAGGCUAAAACUAUA------------AAACACGAAAAAAUGAUGAUC-GUGAUCGUCCG --.........(.(((((...((((((....)).))))................------------...(((((...........))-))).)))))). ( -19.40) >DroSim_CAF1 11291 84 - 1 --GUCCACAUAGUGACGAACAGCACCCAGAGGGCGUGCGAAGGCUAAAACUAUA------------AAACACGAAAAAAUGAUGAUC-GUGAUCGUCCG --.........(.(((((...((((((....)).))))................------------...(((((...........))-))).)))))). ( -19.40) >DroEre_CAF1 38108 87 - 1 GUUUCGACGUAGUGAAGAAGAGCACCAAAAAAGUGUGCGAAGGGUACUACUAUA------------AUACACGAAAAAACUAGGAUCUGUGAUCCAACG (((.....((((((.......(((((......).))))......))))))....------------................(((((...)))))))). ( -17.32) >consensus __GUCCACAUAGUGACGAACAGCACCCAGAGGGCGUGCGAAGGCUAAAACUAUA____________AAACACGAAAAAAUGAUGAUC_GUGAUCGUCCG ........(((((........((((((....)).))))..........)))))...........................(((((((...))))))).. (-14.22 = -13.97 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:23:56 2006