Locus 3091

Sequence ID 2R_DroMel_CAF1
Location 10,582,992 – 10,583,084
Length 92
Max. P 0.982608
window5104

overview

Window 4

Location 10,582,992 – 10,583,084
Length 92
Sequences 5
Columns 92
Reading direction reverse
Mean pairwise identity 72.33
Mean single sequence MFE -15.54
Consensus MFE -8.48
Energy contribution -9.32
Covariance contribution 0.84
Combinations/Pair 1.31
Mean z-score -2.16
Structure conservation index 0.55
SVM decision value 1.92
SVM RNA-class probability 0.982608
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 10582992 92 - 20766785
GCCCCAGGUUGAAAUAAUCAAAUUUUCUGCCUGCAAAUCCAAACACCCAUCCACACCCAUCCACACUUUAUCGCCUGGGUGAGGCAGUAAAU
(((.(((((.((((.........)))).)))))....................((((((..(..........)..)))))).)))....... ( -21.30)
>DroSec_CAF1 32020 89 - 1
-CCCCAGGUUGAAAUAAUCAAAUUUUCUGCCUGCAAAUCCCAACACCCACCCAC--ACAUCCUCACCUUAUCGCCUGGGUUAGGCAGUAAAU
-...(((((.((((.........)))).))))).....................--((..(((.((((........)))).)))..)).... ( -15.90)
>DroSim_CAF1 31382 89 - 1
-CCCCAGGUUGAAAUAAUCAAAUUUUCUGCCUGCAAAUCCAAACACCCACCCAC--CCAUCCACACCUUAUCGCCUGGGUGAGGCAGUAAAU
-...(((((.((((.........)))).)))))................(((((--(((..(..........)..)))))).))........ ( -18.60)
>DroEre_CAF1 31481 77 - 1
-CCCCGGGUAGAAAUAAUCAAAUUUUUUGCCUGCCAAUCCAUACACCCAC--------------ACUUUAUCGCCCAGGUGAGGCAAUAAAU
-...((((((((((.........)))))))))).................--------------..(((((.((((....).))).))))). ( -15.10)
>DroAna_CAF1 65349 73 - 1
-CCCCAGGUCAGAAUAAUCAAAUUUGUAGCAU--------CAACACACACCU----CUCUCCACAUCAACUCCACU------GGCAGUGGCU
-..(((.(((((.((((......)))).(...--------...)........----..................))------)))..))).. (  -6.80)
>consensus
_CCCCAGGUUGAAAUAAUCAAAUUUUCUGCCUGCAAAUCCAAACACCCACCCAC__CCAUCCACACCUUAUCGCCUGGGUGAGGCAGUAAAU
....(((((.((((.........)))).)))))................................(((((((.....)))))))........ ( -8.48 =  -9.32 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:19 2006