Locus 3089

Sequence ID 2R_DroMel_CAF1
Location 10,578,849 – 10,578,943
Length 94
Max. P 0.942463
window5102

overview

Window 2

Location 10,578,849 – 10,578,943
Length 94
Sequences 5
Columns 95
Reading direction reverse
Mean pairwise identity 92.50
Mean single sequence MFE -22.81
Consensus MFE -19.68
Energy contribution -20.52
Covariance contribution 0.84
Combinations/Pair 1.04
Mean z-score -1.66
Structure conservation index 0.86
SVM decision value 1.33
SVM RNA-class probability 0.942463
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 10578849 94 - 20766785
CUU-UUGGCCAACUCCCGGCAAUUGCCCACAAUCAACGGAACAGCUUGAGCUAAAAAUAAAUCUUUGGGAAAUAGAUUCGAUUGAAAAGCCAAAC
..(-(((((........(((....)))..(((((........(((....))).......(((((.........))))).)))))....)))))). ( -19.60)
>DroSec_CAF1 27899 95 - 1
CUUUUUGGCCAACUCCCGGCAAUUGCCCACAAUCAACGGACCAGCUUGAGCUAAAAAUAAAUCUCUGGGAAAUAGGUUCGAUUGAAAAGCCAAAG
...((((((........(((....))).....(((((((((((((....))).........((.....))....)))))).))))...)))))). ( -25.20)
>DroSim_CAF1 27242 95 - 1
CUUUUUGGCCAACUCCCGGCAAUUGCCCACAAUCAACGGACCAGCUUGAGCUAAAAAUAAAUCUCUGGGAAAUAGGUUCGAUUGAAAAGCCAAAG
...((((((........(((....))).....(((((((((((((....))).........((.....))....)))))).))))...)))))). ( -25.20)
>DroEre_CAF1 27483 94 - 1
CUU-UUGGCCAACUCCCGGCAAUUGCCCACAAUCAACGGACCAGCUUGAGCUAAAAAUAAGUCUCUGCGAAGUAGGAUCGAUGGAAAAGCCAAAU
..(-(((((....(((.(((....))).........(((.((.((((..((...............)).)))).)).)))..)))...)))))). ( -22.36)
>DroYak_CAF1 34225 94 - 1
CUU-UUGGCCAACUCCCGGCAAUUGCCCACAAUCAGCGGACCAGCUUGGGCUAAAAAUAAAUCGCAGCAAAAUAGGUUCGAUUGAAAAGCCACAG
...-.((((........(((....))).....(((((((((((..(((.((............))..)))..).)))))).))))...))))... ( -21.70)
>consensus
CUU_UUGGCCAACUCCCGGCAAUUGCCCACAAUCAACGGACCAGCUUGAGCUAAAAAUAAAUCUCUGGGAAAUAGGUUCGAUUGAAAAGCCAAAG
....(((((........(((....))).....(((((((((((((....))).........((.....))....)))))).))))...))))).. (-19.68 = -20.52 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:17 2006