Locus 3087

Sequence ID 2R_DroMel_CAF1
Location 10,577,293 – 10,577,390
Length 97
Max. P 0.685111
window5099

overview

Window 9

Location 10,577,293 – 10,577,390
Length 97
Sequences 5
Columns 113
Reading direction forward
Mean pairwise identity 81.28
Mean single sequence MFE -37.38
Consensus MFE -25.50
Energy contribution -28.06
Covariance contribution 2.56
Combinations/Pair 1.11
Mean z-score -1.74
Structure conservation index 0.68
SVM decision value 0.32
SVM RNA-class probability 0.685111
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 10577293 97 + 20766785
UUUGCCCGGCCAGUGCUCAAUGAAAAGGACUCAAAGGGGCGAACCAGUGGC----AAAG------------UGGGUGUUGGCUGGGCGGCAAAGGACCAAAGGCGGAGGCGCC
...((((((((((..((((.(((.......)))..((......))......----....------------))))..))))))))))(((....).))...((((....)))) ( -37.40)
>DroSec_CAF1 26316 97 + 1
UUUGCCCGGCCAGUGCUCAAUGAAAAGGACUCAAAGGGGCGAACCAGUGGC----AAAG------------UGGGUGUUGGCCGGGUGGCGAAGGACCAACGGCGGAGGCGCC
...((((((((((..((((.(((.......)))..((......))......----....------------))))..))))))))))(((....).))...((((....)))) ( -39.90)
>DroSim_CAF1 25683 97 + 1
UUUGCCCGGCCAGUGCUCAAUGAAAAGGACUCAAAGGGGCGAACCAGUGGC----AAAG------------UGGGUGUUGGCCGGGUGGCGAAGGACCAACGGCGGAGGCGCC
...((((((((((..((((.(((.......)))..((......))......----....------------))))..))))))))))(((....).))...((((....)))) ( -39.90)
>DroEre_CAF1 26061 80 + 1
UUUGC-CGGCCAGUGCUCAAUGAAAAGGACUCAAAGGGGCGUGGCUG-----------------------------GGUGGCUGGGAGGCGAAGGACCAAAGGCGGAG---CC
(((((-((((((.(((((..(((.......)))...))))))))))(-----------------------------(.(.(((....))).)....))...)))))).---.. ( -27.00)
>DroYak_CAF1 32707 110 + 1
UUUGCCCGGCCAGUGCUCAAUGAAAAGGACUCAAAGGGGCGAACCAGUGGGCGUAACAGUGGGUGUACCAGUGGGCGGUGGCUGGGAGGCGAAGGACCAAAGGCGGAG---CC
....((((((((.((((((.((....(.(((((..(..(((..(....)..)))..)..))))).)..)).)))))).)))))))).(((....).))...(((...)---)) ( -42.70)
>consensus
UUUGCCCGGCCAGUGCUCAAUGAAAAGGACUCAAAGGGGCGAACCAGUGGC____AAAG____________UGGGUGUUGGCUGGGAGGCGAAGGACCAAAGGCGGAGGCGCC
...((((((((((((((((.(((.......)))..((......))..........................))))))))))))))))(((....).))...((((....)))) (-25.50 = -28.06 +   2.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:14 2006