| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 10,574,420 – 10,574,519 |
| Length | 99 |
| Max. P | 0.946999 |
| Location | 10,574,420 – 10,574,519 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 76.65 |
| Mean single sequence MFE | -26.50 |
| Consensus MFE | -16.95 |
| Energy contribution | -17.65 |
| Covariance contribution | 0.70 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.96 |
| Structure conservation index | 0.64 |
| SVM decision value | 1.37 |
| SVM RNA-class probability | 0.946999 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10574420 99 - 20766785 AUUUUAGUGCAAUGCAGCUUAGCCGGCUUACCGGUCGCAUGAUUAAUUGUAAUGAGCUGCAUUACAUUUUGCCCAA--UACAUGUGCCCAUCCAG-UAUGUA .....((((.((((((((((((((((....))))).(((........)))..))))))))))).))))........--((((((((......)).-)))))) ( -28.30) >DroVir_CAF1 55334 99 - 1 AUUUUAAUGUGCUGGAACUAAGCCGGCUUACCGGUCGUAUGAUUAAUUGUAAUGUGCUGCAUUACAUUGCACAUAC--GCAAUAUGCGAAGCUAG-CAAACA .........((((((.......((((....))))(((((((......(((((((.....)))))))((((......--)))))))))))..))))-)).... ( -29.60) >DroPse_CAF1 53218 94 - 1 AUUUUAAUGCGAUGCGACUAAGCCGGCUUACCGGUCGCAUGAUUAAUUGUAAUGAGCUGCAUUACGCUUUACGUUGCGUACAU--------CCCGCAAUGGA ....(((.((.(((((.....(((((....))))))))))........((((((.....)))))))).)))(((((((.....--------..))))))).. ( -27.70) >DroSec_CAF1 23506 99 - 1 AUUUUAGUGCAAUGCGGCUUAGCCGGCUUACAGGUCGCAUGAUUAAUUGUAAUGAGCUGCAUUACAUUUUGCCCUC--UACAUGUGCCCAUCUAG-AAUGUA .....((((.(((((((((((...((((....))))(((........)))..))))))))))).)))).(((..((--((.(((....))).)))-)..))) ( -25.30) >DroSim_CAF1 22860 99 - 1 AUUUUAGUGCAAUGCGGCUUAGCCGGCUUACAGGUCGCAUGAUUAAUUGUAAUGAGCUGCAUUACAUUUUGCCCUC--UACAUGUGCCCAUCUAG-UAUGUA .....((((.(((((((((((...((((....))))(((........)))..))))))))))).)))).(((...(--((.(((....))).)))-...))) ( -23.50) >DroEre_CAF1 23310 82 - 1 AUUUUAGUGCAAUGCGGCUUAGCCGGCUUAUCGGUCGCAUGAUUAAUUGUAAUGAGCUGCAUUACAUU----------------AGCCAACGU----ACGUA ...((((((.((((((((((((((((....))))).(((........)))..))))))))))).))))----------------)).......----..... ( -24.60) >consensus AUUUUAGUGCAAUGCGGCUUAGCCGGCUUACCGGUCGCAUGAUUAAUUGUAAUGAGCUGCAUUACAUUUUGCCCUC__UACAUGUGCCCAUCUAG_AAUGUA .....((((.((((((((((((((((....))))).(((........)))..))))))))))).)))).................................. (-16.95 = -17.65 + 0.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:13 2006