Locus 308

Sequence ID 2R_DroMel_CAF1
Location 2,052,007 – 2,052,105
Length 98
Max. P 0.653677
window630

overview

Window 0

Location 2,052,007 – 2,052,105
Length 98
Sequences 5
Columns 98
Reading direction forward
Mean pairwise identity 91.84
Mean single sequence MFE -27.00
Consensus MFE -20.02
Energy contribution -21.30
Covariance contribution 1.28
Combinations/Pair 1.04
Mean z-score -1.90
Structure conservation index 0.74
SVM decision value 0.25
SVM RNA-class probability 0.653677
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2052007 98 + 20766785
CUUUUAUCGAUUCCAUUAUGGCCAACUUCCUGGGCCAACUCGAAAGAGUUUGUGACUUGGACACGAAAAUCUAUAUUCAGCUCUGGCCAGAUGACCCC
.............((((.((((((...(((.((((.(((((....))))).))..)).)))...(((........))).....))))))))))..... ( -24.90)
>DroSec_CAF1 36909 98 + 1
CUUUUAUCGAUCCCAUUUAGGCCAACUUCCUGGGCCAACUCGAAGGAGCUUGAGACUCGGACACGAAAAUCUAUUUUCAGCUCUGGCCAGAUGACCCC
.............(((((.(((((.....((((((((((((....))).))).).)))))....(((((....))))).....))))))))))..... ( -26.50)
>DroSim_CAF1 37539 98 + 1
CUUUUAUCGAUCCCAUUUAGGCCAACUUCCUGGGCCAACUCGAAAGAGCUUGAGACUCGGACACGAACAUCUAUUUUCAGCUCUGGCCAGAUGACCCC
.............(((((.(((((.....((((((((((((....))).))).).)))))....(((........))).....))))))))))..... ( -25.70)
>DroEre_CAF1 36574 98 + 1
CUUUUAUCGAUCCCAUUUAGGCCAACUUCCUGGCCCAAGUCGAAAGAGCCGGAGGCUCGGACACGAAAAUCUAUUUUCAACUCCGGCCGGAUGACCUC
......((.((((......(((((......)))))....((....))(((((((....(....)(((((....)))))..))))))).)))))).... ( -30.30)
>DroYak_CAF1 39548 98 + 1
CUUUUAUCGAUCCCAUUUAGGCCAACUUCCUGGGCCAAGUCGAAAGAGCUUGAGACUCGGACACGAAAAUCAAUUUUCAGCUCUGGCCAGAUGACCUC
.............(((((.(((((.....((((((((((((....)).)))).).)))))....(((((....))))).....))))))))))..... ( -27.60)
>consensus
CUUUUAUCGAUCCCAUUUAGGCCAACUUCCUGGGCCAACUCGAAAGAGCUUGAGACUCGGACACGAAAAUCUAUUUUCAGCUCUGGCCAGAUGACCCC
.............(((((.((((....(((.((.(((((((....))).))).).)).)))...(((((....)))))......)))))))))..... (-20.02 = -21.30 +   1.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:05 2006