Locus 3079

Sequence ID 2R_DroMel_CAF1
Location 10,546,536 – 10,546,642
Length 106
Max. P 0.986698
window5081

overview

Window 1

Location 10,546,536 – 10,546,642
Length 106
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 76.52
Mean single sequence MFE -21.52
Consensus MFE -15.32
Energy contribution -15.88
Covariance contribution 0.56
Combinations/Pair 1.24
Mean z-score -2.19
Structure conservation index 0.71
SVM decision value 2.05
SVM RNA-class probability 0.986698
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 10546536 106 + 20766785
CGGGAGGGGCACAACAAUAAAC----AAACAUUUCGAGGUCGUUAAGGCUCCUUGAUCCCCAGACCCAACGUCCCACCCCCUUCAAAAAUCAGCAGCCCCAUCACAGUCA----------
...(((((((............----...........((..((((((....))))))..)).(((.....)))......................))))).)).......---------- ( -22.20)
>DroSec_CAF1 44404 91 + 1
CGGGAGGGGCACAACAAUAAAC----AAACAUUUCGAGGUCGUUAAGGCUCCUUGAUCCCCAGACCCACCGCUCCACUCCCCU---------------CCAUCAUACUCA----------
.(((((((((............----...........((..((((((....))))))..)).(......))).)).)))))..---------------............---------- ( -21.60)
>DroSim_CAF1 36200 91 + 1
CGGGAGGGGCACAACAAUAAAC----AAACAUUUCGAGGUCGUUAAGGCUCCUUGAUCCCCAGACCCAUCGCCCCACUCCCCU---------------CCAUCAUACUCA----------
.(((((((((............----...........((..((((((....))))))..)).((....)))))))..))))..---------------............---------- ( -24.60)
>DroEre_CAF1 40961 97 + 1
-CGGAGGGGCACAGCAAUAAAC----AAACAUUUCGAGGUCGUUAAGGCUCCUUGAUCCCCAUUCCCAUA--CCCACCCACCA------UCAGCAUGGCCAUCACACUCA----------
-.((.(((((...)).......----...........((..((((((....))))))..)).........--))).))..(((------(....))))............---------- ( -17.40)
>DroYak_CAF1 40908 112 + 1
UGGGAGUGGCACAACAAUAAACAAACAAACAUUUCGAGGUCGUUAAGGCUCCUUGACCCCCAUCCCCAUU--CCCACCCACCA------UCAACAUCUGAAUCACACUCACACCCACACC
(((((((((....................(.....).((..((((((....))))))..))....)))))--)))).......------............................... ( -21.80)
>consensus
CGGGAGGGGCACAACAAUAAAC____AAACAUUUCGAGGUCGUUAAGGCUCCUUGAUCCCCAGACCCAUCG_CCCACCCCCCU______UCA_CA___CCAUCACACUCA__________
.(((.(((((...................(.....).((..((((((....))))))..)).........))))).)))......................................... (-15.32 = -15.88 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:58 2006