Locus 3074

Sequence ID 2R_DroMel_CAF1
Location 10,543,815 – 10,543,935
Length 120
Max. P 0.677817
window5074

overview

Window 4

Location 10,543,815 – 10,543,935
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 96.92
Mean single sequence MFE -23.40
Consensus MFE -18.92
Energy contribution -18.96
Covariance contribution 0.04
Combinations/Pair 1.04
Mean z-score -1.79
Structure conservation index 0.81
SVM decision value 0.30
SVM RNA-class probability 0.677817
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 10543815 120 + 20766785
AAUCUCGAAAAGUUAAUGAACGCAUCCUUGAAAAAACAAGCAUAUUUGUACAGAGAUAUAUGGAUAAUGUCGACAUUUUGCCCGGCAAUCAGCCGACCAUUAAGUUUUAUAAAAACAAAU
.......((((.((((((...(((..((((......))))..((((..((........))..))))............))).((((.....))))..)))))).))))............ ( -19.60)
>DroSec_CAF1 36935 120 + 1
AAUCUCGAAAAGUUAAUGAACGCAUCCUUGAAAAAACAAGCAUAUUUGUACACAGAUAUAUGGAUAAUGCCGACAUUUUGCCCGGCAAUCAGCCGACCAUUAAGUUUUAUAAAAACAAAU
.......((((.((((((..((((((((((......)))..(((((((....)))))))..))))..(((((..........)))))....).))..)))))).))))............ ( -22.20)
>DroSim_CAF1 33496 120 + 1
AAUCUCGAAAAGUUAAUGAACGCAUCCUUGAAAAAACAAGCAUAUUUGUACACAGAUAUAUGGAUAAUGCCGACAUUUUGCCCGGCAAUCAGCCGACCAUUAAGUUUUAUAAAAACAAAU
.......((((.((((((..((((((((((......)))..(((((((....)))))))..))))..(((((..........)))))....).))..)))))).))))............ ( -22.20)
>DroEre_CAF1 38324 120 + 1
AAUCUGGAAAAGUUAAUGAACGCAUCCUUGAAAAAACAAGCAUAUUUGUACACAGAUGUGUGGAUAACGCCGACAUUUUGCCCGGCAAUCAGCCGACCAUUAAGUUUUAUAAAAACAAAU
.......((((.((((((..((((((((((......)))(((((((((....)))))))))))))...((((..........)))).....).))..)))))).))))............ ( -26.10)
>DroYak_CAF1 38196 120 + 1
AAUCUCGAAAAGUUAAUGAACGCAUCCUUGAAAAAACAAGCAUAUUUGUACAAAGUUGUAUGGAUAAUGCCGACAUUUUGCCCGGCAAUCAGCGGACCAUUAAGUUUUAUAAAAACAAAU
.......((((.((((((..(((...((((......))))..((((..((((....))))..)))).(((((..........)))))....)))...)))))).))))............ ( -26.90)
>consensus
AAUCUCGAAAAGUUAAUGAACGCAUCCUUGAAAAAACAAGCAUAUUUGUACACAGAUAUAUGGAUAAUGCCGACAUUUUGCCCGGCAAUCAGCCGACCAUUAAGUUUUAUAAAAACAAAU
.......((((.((((((...(((..((((......))))..((((..((........))..))))............))).((((.....))))..)))))).))))............ (-18.92 = -18.96 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:51 2006