Locus 3072

Sequence ID 2R_DroMel_CAF1
Location 10,543,359 – 10,543,470
Length 111
Max. P 0.537917
window5072

overview

Window 2

Location 10,543,359 – 10,543,470
Length 111
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 94.81
Mean single sequence MFE -33.29
Consensus MFE -29.22
Energy contribution -29.22
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.50
Structure conservation index 0.88
SVM decision value 0.01
SVM RNA-class probability 0.537917
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 10543359 111 - 20766785
UGGCC-------AGAUUAAUGGCUGCGAGCUGAUUAGUUUGAGGCCAAGACAAAAGGC--AUCACAAAAGGCCAACUCUGUGGGCCGUAAUUAAGCAGAGACAACGCAACAUGGUGCUUU
(((((-------(((((((((((.....))).))))))))..)))))......(((((--((((.....((((.((...)).))))........((.........))....))))))))) ( -32.40)
>DroSim_CAF1 33038 111 - 1
UGGCC-------AGAUUAAUGGCUGCGAGCUGAUUAGUUUGAGGCCAAGACAAAAGGC--AUCACAAAAGGCCAACUCUGUGGGCCGUAAUUAAGCAGAGACAACGCAACAUGGUGCUUU
(((((-------(((((((((((.....))).))))))))..)))))......(((((--((((.....((((.((...)).))))........((.........))....))))))))) ( -32.40)
>DroEre_CAF1 37890 110 - 1
UGGCC-------AGAUUAAUGGCUGCGAGCUGAUUAGUUUGGGGCCAAGACAAA-GGC--AUCACAAAAGGCCAACUCUGUGGGCCUUAAUUAAGCAGAGACAACGCAACAUGGUGCUUU
(((((-------.((((((((((.....))).)))))))...))))).....((-(((--((((...((((((.((...)).))))))......((.........))....))))))))) ( -34.40)
>DroYak_CAF1 37753 120 - 1
UGGCCAGAUGCCAGAUUAAUGGCUGCGAGCUGAUUAGUUUGAGGCCAAGACAAAAGGCAUAUCACAAAAGGCCAACUCUGUGGGCCGUAAUUAAGCAGAGACAACGCAACAUGGUGCUUU
(((((..(((((.......(((((.((((((....)))))).)))))........))))).........))))).((((((.............)))))).....(((......)))... ( -33.98)
>consensus
UGGCC_______AGAUUAAUGGCUGCGAGCUGAUUAGUUUGAGGCCAAGACAAAAGGC__AUCACAAAAGGCCAACUCUGUGGGCCGUAAUUAAGCAGAGACAACGCAACAUGGUGCUUU
(((((..............(((((.((((((....)))))).)))))........(........)....))))).((((((.............)))))).....(((......)))... (-29.22 = -29.22 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:49 2006