Locus 3062

Sequence ID 2R_DroMel_CAF1
Location 10,526,168 – 10,526,288
Length 120
Max. P 0.999869
window5043

overview

Window 3

Location 10,526,168 – 10,526,288
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 97.17
Mean single sequence MFE -41.62
Consensus MFE -41.12
Energy contribution -40.80
Covariance contribution -0.32
Combinations/Pair 1.10
Mean z-score -2.44
Structure conservation index 0.99
SVM decision value 4.32
SVM RNA-class probability 0.999869
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 10526168 120 + 20766785
UUUUGAAGUGGGUUUCAAUGUUCGAGUUCGCUUCAAUCUCUUGUGAGCCACGCUUGGACCUGCCAGCUAAAAGACACAGAUACUUUGCGUUUAGUCUUGGUCGGUCUGCGCGUCGUCUCU
..((((((((..(((........)))..))))))))........((((.((((.((((((.((((((((...(((.((((...)))).)))))))..)))).)))))).)))).).))). ( -39.30)
>DroSec_CAF1 27019 120 + 1
UUUUGAAGUGGGUUCCAAUGUUCGAGUUCGCUUCAAUCUCUUGUGAGCCGCGCUUGGACCUGCCAGCUAAAAGAUACAGAUACUUUGCGUUUAGUCUUGGUCGGUCUGCGCGUGGUCUCU
..((((((((..(((........)))..))))))))........(((((((((.((((((.((((((((((.....((((...))))..))))))..)))).)))))).)))))).))). ( -46.10)
>DroSim_CAF1 23204 120 + 1
UUUUGAAGUGGGUUCCAAUGUUCGAGUUCGCUUCAAUCUCUUGUGAGCCGCGCUUGGACCUGCCAGCUAAAAGAUACAGAUACUUUGCGUUUAGUCUUGGUCGGUCUGCGCGUGGUCUCU
..((((((((..(((........)))..))))))))........(((((((((.((((((.((((((((((.....((((...))))..))))))..)))).)))))).)))))).))). ( -46.10)
>DroEre_CAF1 29283 120 + 1
UUUUGCAGUGGGUUCCAAUGUUCGAGUUCGCUUCAAUCUCUUGUGAGCCGCGCUUGGACCUGUCAGCUAAAAGAUACAGAUACUUUGCGUUUAGUCUUGGUCGGUCUGCGCGUGGUCUCU
..(((.((((..(((........)))..)))).)))........(((((((((.((((((..(((((((((.....((((...))))..))))))..)))..)))))).)))))).))). ( -37.80)
>DroYak_CAF1 27338 120 + 1
UUUUGAAGUGGCUUCCAAUGUUCGAGUUCGCUUCAAUCUCUUGUGAGCCGCGCUUGGACCUGUCAGCUACAAGAUACAGAUACUUUGCGUUUAGUCUUGGUCGGUCUGCGCGUGGUCUCU
..((((((((..(((........)))..))))))))........(((((((((.((((((..((((..((.(((..((((...))))..))).)).))))..)))))).)))))).))). ( -38.80)
>consensus
UUUUGAAGUGGGUUCCAAUGUUCGAGUUCGCUUCAAUCUCUUGUGAGCCGCGCUUGGACCUGCCAGCUAAAAGAUACAGAUACUUUGCGUUUAGUCUUGGUCGGUCUGCGCGUGGUCUCU
..((((((((..(((........)))..))))))))........(((((((((.((((((..(((((((...(((.((((...)))).)))))))..)))..)))))).)))))).))). (-41.12 = -40.80 +  -0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:22 2006