| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 10,515,470 – 10,515,590 |
| Length | 120 |
| Max. P | 0.880527 |
| Location | 10,515,470 – 10,515,590 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 89.58 |
| Mean single sequence MFE | -28.47 |
| Consensus MFE | -22.75 |
| Energy contribution | -22.20 |
| Covariance contribution | -0.55 |
| Combinations/Pair | 1.13 |
| Mean z-score | -2.85 |
| Structure conservation index | 0.80 |
| SVM decision value | 0.91 |
| SVM RNA-class probability | 0.880527 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10515470 120 + 20766785 UGUGCACAUGCAAAACUUACUCAGUAACUAUGCCAGUAAAUGUUUAAAAUGAGUGCUACUUGUAGAAACACAUACUAAAUUUAUGAAAAGCACUGAAUAACAUAUUGUGCGCACGGUUUU ((((((((........(((((..(((....))).)))))(((((.....(.((((((..(..((((.............))))..)..)))))).)..)))))..))))))))....... ( -24.92) >DroSec_CAF1 16038 115 + 1 UGUGCACAUGCAAAACUUACUCAGUAACUAUGUCAGUAAGUGUUUAAAAUGGGUAGUACUUGUAGAAAUACAUACUAAAUUUAUGAAACGCA-----UAUACUAUUGUGCACACGGUUUU (((((((((((...(((((((((.......))..)))))))((((.((((...(((((..((((....))))))))).))))...)))))))-----........))))))))....... ( -28.60) >DroSim_CAF1 11103 115 + 1 UGUGCACAUGCAAAACUUACUCAGUAACUAUGUCAGUAAGUGUUUAAAAUGAGUAGUACUUGUAGAAAUACAUACUACAUUUAUGAAACGCA-----UAUAGUAUUGUGCACACCGUUUU (((((((((((...(((((((((.......))..)))))))((((...((((((((((..((((....))))))))))..)))).))))...-----....))).))))))))....... ( -31.90) >consensus UGUGCACAUGCAAAACUUACUCAGUAACUAUGUCAGUAAGUGUUUAAAAUGAGUAGUACUUGUAGAAAUACAUACUAAAUUUAUGAAACGCA_____UAUAAUAUUGUGCACACGGUUUU (((((((((((((...(((((((.(((.(((........))).)))...)))))))...)))))......((((.......))))....................))))))))....... (-22.75 = -22.20 + -0.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:09 2006