| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 10,512,151 – 10,512,255 |
| Length | 104 |
| Max. P | 0.961821 |
| Location | 10,512,151 – 10,512,255 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 76.03 |
| Mean single sequence MFE | -28.78 |
| Consensus MFE | -13.97 |
| Energy contribution | -13.97 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.44 |
| Structure conservation index | 0.49 |
| SVM decision value | 1.53 |
| SVM RNA-class probability | 0.961821 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10512151 104 + 20766785 --AUCUAGCCCAACCAGCCCAUCUAGGUGGGGCA---CAACAAUUGCAGGAGAUCGGCAAUUUCCUGCUU---GCCUCGCAGG----CAACUUGAUUACAAAGCACAAAAAUCAAU --.....((((.(((((.....)).))).)))).---........(((((((((.....)))))))))((---(((.....))----))).((((((............)))))). ( -31.00) >DroVir_CAF1 9957 99 + 1 AGCUCAGGCU-------------UUGGUAAGGCA---CAACAAUUGCAGGAGAUCGUCAAUUUCCUGGCUGCUGCCU-GCAGGUAGCCAAGUUGAUUACAAAGCAGUAAAAUCAAU .......(((-------------(((.(((....---((((.....((((((((.....))))))))...((((((.-...))))))...)))).)))))))))............ ( -29.50) >DroGri_CAF1 9900 94 + 1 ------GACU-------------UUGGUAAGGUGGAGGAGCGAUUGGAGGAGAUCGCCAAUUUCCUGAU-GC-GCCU-GCAGGUACCCAAGUUGAUUACAAAGCACUAAAAUCAAU ------((((-------------(.((((...((.(((.((.(((..(((((((.....))))))))))-))-.)))-.))..)))).)))))....................... ( -24.10) >DroEre_CAF1 12975 91 + 1 --AUCUAGCC-------------CAGGUGGGGCA---CAACAAUUGCAGGAGAUCGGCAAUUUCCUGCUU---GCCUCGCAGG----CAACAUGAUUACAAAGCACAAAAAUCAAU --.....(((-------------...((((((((---........(((((((((.....))))))))).)---))))))).))----)....(((((............))))).. ( -29.70) >DroYak_CAF1 9457 91 + 1 --AUCUAGCC-------------UAGGUGGGGCA---CAACAAUUGCAGGAGAUCGGCAAUUUCCUGCUU---GCCUCUCAGG----CAACUUGAUUACAAAGCACAAAAAUCAAU --.....(((-------------(.((.((((((---........(((((((((.....))))))))).)---))))))))))----)...((((((............)))))). ( -28.10) >DroMoj_CAF1 11430 96 + 1 GGCACCGGCU-------------UUGGCAAGGCA---UAACAAUUGCAGGAGAUCGUCAAUUUCCUGGCU---GCCU-GCAGGUAGCCAAGUUGAUUACAAAGCAGUAAAAUCAAU ((((((.((.-------------..((((..(((---.......)))(((((((.....)))))))...)---))).-)).))).)))..(((((((((......)))..)))))) ( -30.30) >consensus __AUCUAGCC_____________UAGGUAAGGCA___CAACAAUUGCAGGAGAUCGGCAAUUUCCUGCUU___GCCU_GCAGG____CAACUUGAUUACAAAGCACAAAAAUCAAU ..........................((.((((.......(....)((((((((.....))))))))......)))).))...........((((((............)))))). (-13.97 = -13.97 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:00 2006