Locus 3047

Sequence ID 2R_DroMel_CAF1
Location 10,510,500 – 10,510,599
Length 99
Max. P 0.684534
window5019

overview

Window 9

Location 10,510,500 – 10,510,599
Length 99
Sequences 3
Columns 102
Reading direction forward
Mean pairwise identity 93.46
Mean single sequence MFE -19.30
Consensus MFE -17.99
Energy contribution -17.77
Covariance contribution -0.22
Combinations/Pair 1.04
Mean z-score -1.71
Structure conservation index 0.93
SVM decision value 0.31
SVM RNA-class probability 0.684534
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 10510500 99 + 20766785
---GGCAACGACAAUGGCAACAACAUUAAACGUGUUUACACCAUGUCCGACCAGUUGAUAUGCCAACUGCCCCCCGACCUGUCCUGCACCCCACCACACACA
---.(((..((((((((....(((((.....)))))....))))(((.(..((((((......))))))....).))).)))).)))............... ( -19.30)
>DroSec_CAF1 11145 102 + 1
AACGGCAACGACAAUGGCAACAACAUUAAACGUGUUUACACCAUGUCCGACCAGUUGAUAUGCCAACUGCCCCCCGACCUGUCCUGUACCCCACCCCACACA
..(((....((((.(((....(((((.....)))))....)))))))....((((((......))))))....))).......................... ( -18.20)
>DroYak_CAF1 7835 99 + 1
AACGGCAACGACAAUGGCAACAACAUUAAACGUGUUUACACCAUGUCCGACCAGUUGAUAUGCCAACUGC---CCGACCUGUCCUGUCCCCCACUACACACA
...((((..((((((((....(((((.....)))))....))))(((.(..((((((......)))))).---.)))).)))).)))).............. ( -20.40)
>consensus
AACGGCAACGACAAUGGCAACAACAUUAAACGUGUUUACACCAUGUCCGACCAGUUGAUAUGCCAACUGCCCCCCGACCUGUCCUGUACCCCACCACACACA
....(((..((((((((....(((((.....)))))....))))(((.(..((((((......))))))....).))).)))).)))............... (-17.99 = -17.77 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:58 2006