Locus 304

Sequence ID 2R_DroMel_CAF1
Location 2,037,808 – 2,037,925
Length 117
Max. P 0.801513
window625

overview

Window 5

Location 2,037,808 – 2,037,925
Length 117
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 81.92
Mean single sequence MFE -21.04
Consensus MFE -12.29
Energy contribution -13.93
Covariance contribution 1.64
Combinations/Pair 1.23
Mean z-score -2.21
Structure conservation index 0.58
SVM decision value 0.62
SVM RNA-class probability 0.801513
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2037808 117 - 20766785
CAAACAUGAUAUUUCGAUUGCCUAAAAAUAGAAAUACUACUUAUAUUUAAUCCUGGUCUUCCGUAGUCACUAAUAAAUAAUCA---UGGUGACUCAAAGAAGCGAAUUCAAGAAUUCGAA
.........((((((.(((.......))).)))))).....................((((..(((((((((...........---)))))))).)..))))((((((....)))))).. ( -18.40)
>DroSec_CAF1 22934 120 - 1
CAAACUUGAUAUUUCGAUUGCCUAAAAAUAGGAAUACUACUUAUAUUUAUUCCUAGUCUUCCGUAGUCACUAAUAAAUAAUCACCACAGUGACUCAAUGAAGCGAAAUCAAGAAUUCGAA
....((((((..((((............((((((((...........))))))))..((((...(((((((................)))))))....))))))))))))))........ ( -24.29)
>DroSim_CAF1 23674 120 - 1
CAAACUUGAUAUUUCGAUUGCCUAAAAAUAGGAAUACUUCUUAUAUUUAUUCCUAGUCUUCCGUAGUCACUAAUAAAUAAUCACCACAGUGACUCAAUGAAGCGAAAUCAAGAAUUCGAA
....((((((..((((............((((((((...........))))))))..((((...(((((((................)))))))....))))))))))))))........ ( -24.29)
>DroEre_CAF1 22539 112 - 1
-UAACUUGAUAUAUCGAUUGCCUAAAAAUAGGAAUACUACCUAUAU--AUUCC-CGUCUUCCGCAGUCACCAAUAAAUAAUCG---CGGUGACUCAAA-CAGCGAAAUCAAGAAUUCCAA
-...((((((.....((((((...((.(..((((((.........)--)))))-..).))..))))))............(((---(.((.......)-).)))).))))))........ ( -23.50)
>DroYak_CAF1 26124 108 - 1
--------AUAUAUUGAAAGCCCAAAAGUAAAAAACCUACCUAUACUAAUUCCUAGUCUUCUGAAGUCACUAAUAAGUAAUCA---UGGUGACUCAAA-ACGUGAAAUCAGGAAUUCCAA
--------.......................................(((((((.(..((((((.(((((((...........---))))))))))..-....)))..)))))))).... ( -14.70)
>consensus
CAAACUUGAUAUUUCGAUUGCCUAAAAAUAGGAAUACUACUUAUAUUUAUUCCUAGUCUUCCGUAGUCACUAAUAAAUAAUCA___CGGUGACUCAAAGAAGCGAAAUCAAGAAUUCGAA
....((((((..((((..............((((.((((..............)))).))))(.(((((((................)))))))).......))))))))))........ (-12.29 = -13.93 +   1.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:00 2006