Locus 3039

Sequence ID 2R_DroMel_CAF1
Location 10,482,064 – 10,482,165
Length 101
Max. P 0.874913
window5005

overview

Window 5

Location 10,482,064 – 10,482,165
Length 101
Sequences 5
Columns 106
Reading direction reverse
Mean pairwise identity 78.02
Mean single sequence MFE -18.94
Consensus MFE -14.22
Energy contribution -14.50
Covariance contribution 0.28
Combinations/Pair 1.21
Mean z-score -1.68
Structure conservation index 0.75
SVM decision value 0.89
SVM RNA-class probability 0.874913
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 10482064 101 - 20766785
UAUCCUUUUGCAAUUAUUAGCCAUUUUCAAAGUUCAUCUUUCUUGAAAAUUGCCUAUGAAUAAAUAAUGGUCUAAUGGCGGCAGC-----CCAUUCCCAGCCCCAU
.......((((..((((((((((((......((((((......(....)......))))))....))))).)))))))..)))).-----................ ( -17.00)
>DroSec_CAF1 85417 101 - 1
UAUCCUUUUGCAAUUAUCAGCCAUUUUCAAAGUUCAUCUUUCUUGAGAAUGGCCCAUGAAUAAUAAAUGGUCUAAUGGCAUCAGC-----CCAUUCCCAGCCCCAU
.........((..((((..(((((((((((............)))))))))))..))))........(((...((((((....).-----))))).)))))..... ( -21.00)
>DroSim_CAF1 85983 101 - 1
UAUCCUUUUGCAAUUAUCAGCCAUUUUCAAAGUUCAUCUUUCUUGAGAAUGGCCCAUGAAUAAUAAAUGGUCUAAUGGCAUCAGC-----CAAUUCCCAGCCCCAU
.........((..((((..(((((((((((............)))))))))))..))))........(((.....((((....))-----))....)))))..... ( -22.60)
>DroEre_CAF1 83340 106 - 1
GGAUAUAUUGCAAUUAUCAGCCAUUUUCAAAGUUCAUCUUCCUUGAAUACGGCCCAUGCAUAAAUAAUGGUCUAAUGGCGGAACCCCAUCCCAUUCCAAACCCCAU
(((................((((((......(((((.......)))))..((.((((.........)))).))))))))(((......)))...)))......... ( -18.90)
>DroYak_CAF1 86745 88 - 1
GAAUAUAGUGCACUUAUCAGCCAUU-UCAAAGUUCAUCAUUCUUGACAACGGCCCAUGCAUAAAUAAUGGUCUCAUGGCGGCACCCCAU-----------------
.......((((........(((((.-.....(((..(((....))).)))((((.((.........))))))..))))).)))).....----------------- ( -15.20)
>consensus
UAUCCUUUUGCAAUUAUCAGCCAUUUUCAAAGUUCAUCUUUCUUGAAAAUGGCCCAUGAAUAAAUAAUGGUCUAAUGGCGGCAGC_____CCAUUCCCAGCCCCAU
........(((........(((((((((((.(........).)))))))))))((((.........)))).......))).......................... (-14.22 = -14.50 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:46 2006