| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 10,480,990 – 10,481,081 |
| Length | 91 |
| Max. P | 0.756475 |
| Location | 10,480,990 – 10,481,081 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 80.47 |
| Mean single sequence MFE | -26.38 |
| Consensus MFE | -16.59 |
| Energy contribution | -16.76 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.89 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.49 |
| SVM RNA-class probability | 0.756475 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10480990 91 + 20766785 -UGGG----CGGGGCAA----AAGGCAAGUGCCUUAAA-AAA-GUCUCAAAACGUUCAAUUUAGCUGUAAAACGCUGAGC-ACUACCCUUCAUUAUUAAUGAC -.(((----..(.((..----(((((....)))))...-...-.................(((((........)))))))-.)..))).((((.....)))). ( -20.70) >DroSec_CAF1 84438 77 + 1 -UGGG----CGGGGCAA----GAGGCAAGUGCCUUAAA-AAACGUCUCAAAACGUUCAAUGUAGCUGUAAAACGCUGAGC-ACUG---------------AGC -.(((----((......----(((((....)))))...-...)))))......(((((.((((((........)))..))-).))---------------))) ( -20.60) >DroSim_CAF1 84982 93 + 1 -UGGG----CGGGGCAA----GAGGCAAGUGCCUCAAAAAAACGUCUCAAAACGUUCAAUGUAGCUGUAAAACGCUGAGC-ACUGCCCUCCAUUAUUAAUGGC -.(((----(((.((..----(((((....))))).....(((((......))))).....((((........)))).))-.)))))).((((.....)))). ( -30.80) >DroEre_CAF1 82315 92 + 1 -UGGG----CGGGGCAC----GAGGCAAGUGCCUCAAA-AAACGUCUCAAAAAGUUUAAUGUAGCUGUAAAACGCUGAAA-ACUGCCCUCCAUUAUUAAUGAC -..((----.(((((..----(((((....)))))...-.............(((((....((((........)))).))-))))))))))............ ( -26.60) >DroYak_CAF1 85743 92 + 1 -UGGG----CGGGGCAC----GAGGCAAGUGCCUCAAA-AAACGUCUCAAAAAGUUCAAUGUAGCUGUAAAACGCUGAGC-ACUGCCCUCCAUUAUUAAUGGC -.(((----(((.((..----(((((....)))))...-......................((((........)))).))-.)))))).((((.....)))). ( -28.90) >DroPer_CAF1 86055 95 + 1 GUGGGGAGUGGGGGCAAAGGCGAGGCAAGUGCUUCAA------GUCUCUAA-AGUUCAAUGUAGCUGUAA-ACGCUCAGUGGCUGCCCUCCAUUAUUCAUUUC (((((.((((((((((.(((((((((....)))))..------))))....-........((.((((...-.....)))).))))))).))))).)))))... ( -30.70) >consensus _UGGG____CGGGGCAA____GAGGCAAGUGCCUCAAA_AAACGUCUCAAAAAGUUCAAUGUAGCUGUAAAACGCUGAGC_ACUGCCCUCCAUUAUUAAUGGC ..(((.....(((((......(((((....)))))........))))).............((((........))))........)))............... (-16.59 = -16.76 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:43 2006