Locus 3030

Sequence ID 2R_DroMel_CAF1
Location 10,452,962 – 10,453,058
Length 96
Max. P 0.683213
window4993

overview

Window 3

Location 10,452,962 – 10,453,058
Length 96
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 76.76
Mean single sequence MFE -30.57
Consensus MFE -20.78
Energy contribution -20.08
Covariance contribution -0.69
Combinations/Pair 1.28
Mean z-score -1.20
Structure conservation index 0.68
SVM decision value 0.31
SVM RNA-class probability 0.683213
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 10452962 96 + 20766785
UGUGAUAGC------AACAAUGCCAACCAGGAUGUUGUGGACCAGGCCACAACAAGUGCAAUAUACGGCAUUGCGCCCGAAACGACACACAUCUACGGAGUC
((((...((------..(((((((........((((((((......)))))))).(((.....)))))))))).)).((...))...))))((....))... ( -26.70)
>DroVir_CAF1 73775 87 + 1
UGUGAUAAC---------------AAUCAGGACGCUGUGGAUCAUGCCACGGCAAGUGCAAUAUAUGGCGUUGCGCCCGAGGCGGCCCACAUCUACGGUGUC
..((((...---------------.)))).((((((((((((..((((.(((...(((((((.......)))))))))).))))......)))))))))))) ( -33.50)
>DroPse_CAF1 52446 102 + 1
UGUGAUACCGACCAUACCAAUGCCGAGCAAGAUGUUGUGGAUCAGGCCGCGGCAAGUGCAAUAUACGGCGUUGCGCCGGAGAACGCUCACAUCUACGGUGUC
...(((((((.......((((((((.(((...((((((((......))))))))..)))......)))))))).....(((....))).......))))))) ( -35.00)
>DroGri_CAF1 58125 87 + 1
UGUGAUAGC---------------AAUCAGGAUGCUGUGGAUCAUGCCGCAGCAAGUGCAAUAUAUGGUGUUGCCCCAGAGCCGGCACACAUCUAUGGGGUC
(.((((...---------------.)))).).((((((((......))))))))...((..((((.(((((((((........)))).)))))))))..)). ( -27.20)
>DroMoj_CAF1 80050 84 + 1
UGUGAUAGC---------------AAUCAGGACGCUGUGGAUCA---CACAGCAAGUGCAAUAUAUGGCGUUGCGCCCGAGGCGGCCCACAUUUAUGGUGUC
.......((---------------.....((..((((((.....---))))))..(((((((.......)))))))))...))((((((......))).))) ( -26.00)
>DroPer_CAF1 58682 102 + 1
UGUGAUACCGACCAUACCAAUGCCGAGCAAGAUGUUGUGGAUCAGGCCGCGGCAAGUGCAAUAUACGGCGUUGCGCCGGAGAACGCUCACAUCUACGGUGUC
...(((((((.......((((((((.(((...((((((((......))))))))..)))......)))))))).....(((....))).......))))))) ( -35.00)
>consensus
UGUGAUAGC_______________AAUCAGGAUGCUGUGGAUCAGGCCACAGCAAGUGCAAUAUACGGCGUUGCGCCCGAGACGGCACACAUCUACGGUGUC
((((.............................(((((((......)))))))..(((((((.......)))))))...........))))........... (-20.78 = -20.08 +  -0.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:34 2006