Locus 303

Sequence ID 2R_DroMel_CAF1
Location 2,035,502 – 2,035,592
Length 90
Max. P 0.969009
window624

overview

Window 4

Location 2,035,502 – 2,035,592
Length 90
Sequences 5
Columns 112
Reading direction forward
Mean pairwise identity 81.33
Mean single sequence MFE -27.78
Consensus MFE -23.72
Energy contribution -24.44
Covariance contribution 0.72
Combinations/Pair 1.11
Mean z-score -2.19
Structure conservation index 0.85
SVM decision value 1.63
SVM RNA-class probability 0.969009
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2035502 90 + 20766785
UUAAAGUCUGUGCCGCAGUCAACAAAGUUGGUCGAAGAACGACAUUGACUUGACUCAACAGCAAGUUGACUUCAAGCGGCAGAUACACAG----------------------
.....((.(.(((((((((((((...((((((((.....)))).((((......))))))))..)))))))....)))))).).))....---------------------- ( -30.00)
>DroSec_CAF1 20613 90 + 1
UUAAAGUCUGUGCCGCAGUCAACAAAGUUUGUCGAAGAACGACAUUGACUUGACUCAACAGCAAGUUGACUUCAAGCGGCAGAUACACAG----------------------
.....((.(.((((((.(((((.......(((((.....))))))))))((((.(((((.....)))))..)))))))))).).))....---------------------- ( -28.31)
>DroSim_CAF1 20836 112 + 1
UUAAAGUCUGUGCCGCAGUCAACAAAGUUGGUCGAAGAACGACAUUGACUUGACUCAACAGCAAGUUGACUUCAAGCGGCAGAUACACAGAUACACAGAUACGCAGAUACUC
.....((((((((((((((((((...((((((((.....)))).((((......))))))))..)))))))....))))).(.....)..............)))))).... ( -31.10)
>DroEre_CAF1 20239 112 + 1
UUAAAGUUUGCGCCGCAGUCAGCAAAGUUGGUUGUAGAGCGACAUUGACUUGACUCAACAGCAAGUUGACUUCAAGCUGCAGAUACACAGAUGCGCAGAUACACAGAUACUC
.....((((((((.(.(((((((...((((((((.....)))).((((......))))))))..))))))).)...(((........)))..))))))))............ ( -28.90)
>DroYak_CAF1 23687 107 + 1
UUAAAGUUUGUGCCGCAGUCAACAAAGUUGGCCGAAGAACGACAUUG-----ACUCAACAACAAGUUGACUUCAAGCUGCAGAUACACAGAUACACAGAUACUUAGAUACUC
.....((((((((.(((((.......((((.........)))).(((-----(.(((((.....)))))..))))))))).)...))))))).................... ( -20.60)
>consensus
UUAAAGUCUGUGCCGCAGUCAACAAAGUUGGUCGAAGAACGACAUUGACUUGACUCAACAGCAAGUUGACUUCAAGCGGCAGAUACACAGAU_C_CAGAUAC__AGAUACUC
.....((.(.(((((((((((((...((((((((.....)))).((((......))))))))..)))))))....)))))).).)).......................... (-23.72 = -24.44 +   0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:59 2006