Locus 3029

Sequence ID 2R_DroMel_CAF1
Location 10,452,249 – 10,452,369
Length 120
Max. P 0.585110
window4992

overview

Window 2

Location 10,452,249 – 10,452,369
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 79.89
Mean single sequence MFE -46.06
Consensus MFE -21.57
Energy contribution -22.47
Covariance contribution 0.90
Combinations/Pair 1.46
Mean z-score -2.30
Structure conservation index 0.47
SVM decision value 0.10
SVM RNA-class probability 0.585110
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 10452249 120 - 20766785
CACUUAGCACACUCAACUGCUGACAGCUGCACAGCUCAUCUGGUAGUUGUCGUAGUUGAUUAUCAUCGGCGAACAGAAAGCGAAGGCUACGCAACAUCCCAAUUGUGCUAGGUAGGCGUA
.((((((((((.((((((((.(((((((((.(((.....))))))))))))))))))))........((.((......(((....)))........))))...))))))))))....... ( -46.14)
>DroVir_CAF1 73014 120 - 1
CGCUUAAGACACUCAAUUGACUGCAGCUGCAGAGCUCGUCGGGCAGCUGGCGCAGCUGAUUGUCGUCGGCGAAGAGGAAGCGCAGUUUGACCAGCGAUCCAAUUGUGCUGGGAAGGCGCA
((((...((((.((......((((....))))((((((((((....)))))).)))))).))))...))))........((((.......((((((.........))))))....)))). ( -45.20)
>DroPse_CAF1 51733 120 - 1
UACUCAAGACACUCAGCUGCUGGCAGCUGCAAAGCUCGUCGGGCAGCUGGCGGAGCUGAUUCUCAUCGGCGAAGAGAAACCGCAGACUUCGCAGCAUUCCAAUGGUGCUGGGCAGGCGGA
..(((....(.(.(((((((((((((((....)))).))).))))))))).)..((((((....))))))...)))...((((...((.(.(((((((.....))))))).).)))))). ( -48.70)
>DroWil_CAF1 85792 120 - 1
CACUCAGUACACUCAGCUGCUGGCAACUGCACAGCUCAUCGGGCAAUUGACGCAGCUGAUUAUCGUCCGCGAAGAGAAACCUCAAGCGUUUCAGCAUUCCAAUGGUGCUGGGCAGACGCA
..(((.......((((((((((((....)).))(((.....))).......))))))))...(((....))).))).........(((((((((((((.....))))))))...))))). ( -39.70)
>DroAna_CAF1 59938 120 - 1
CGCUCAGCACGCUUAGCUGCUGACAGCUGCACAGUUCAUCGGGCAACUGACGCAACUGAUUGUCAUCGGCAAAUAGAAAUCGCAGACUGCGCAGCAUUCCAAUCGUGCUGGGCAGGCGAA
.((((((((((....(((((.(.(((((((.((((((.((((....)))).).))))).((((.....)))).........)))).)))))))))........))))))))))....... ( -50.40)
>DroPer_CAF1 57959 120 - 1
UACUCAAGACACUCAGCUGCUGGCAGCUGCAAAGCUCGUCGGGCAACUGGCGGAGCUGAUUCUCAUCGGCGAAGAGAAACCGCAGACUUCGCAGCAUUCCAAUGGUGCUGGGCAGGCGGA
..(((........((((((....))))))......(((((((....))))))).((((((....))))))...)))...((((...((.(.(((((((.....))))))).).)))))). ( -46.20)
>consensus
CACUCAAGACACUCAGCUGCUGGCAGCUGCACAGCUCAUCGGGCAACUGGCGCAGCUGAUUAUCAUCGGCGAAGAGAAACCGCAGACUUCGCAGCAUUCCAAUGGUGCUGGGCAGGCGCA
..(((.......((((.((((.(.((((....))))...).)))).))))....((((((....))))))...)))...((((...((.(.((((((.......)))))).).)))))). (-21.57 = -22.47 +   0.90)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:33 2006