Locus 3028

Sequence ID 2R_DroMel_CAF1
Location 10,448,653 – 10,448,743
Length 90
Max. P 0.885665
window4991

overview

Window 1

Location 10,448,653 – 10,448,743
Length 90
Sequences 6
Columns 94
Reading direction forward
Mean pairwise identity 67.87
Mean single sequence MFE -20.80
Consensus MFE -5.36
Energy contribution -5.87
Covariance contribution 0.50
Combinations/Pair 1.29
Mean z-score -2.38
Structure conservation index 0.26
SVM decision value 0.94
SVM RNA-class probability 0.885665
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 10448653 90 + 20766785
GAAGCCAAGGGUUCCAAGAAGGGCAAAGGCAAAAAGAAGUAAGUUCCCCAACUAGUUUGGUGGAACUAACUUA---AAAAGAGGAAUUCAAUG-
........(((((((.......((....))......((((.((((((((((.....)))).)))))).)))).---......)))))))....- ( -25.50)
>DroPse_CAF1 47816 70 + 1
CAGUCGAAGGGCUCUAAGAAGGGCAAGGGCACGAAGAAGUAGUGGU-GUUCAAAU----------------CA------AAAUUAAUCAAAAU-
.....((...(((((....)))))..((((((.(........).))-))))...)----------------).------..............- ( -12.50)
>DroSec_CAF1 52750 90 + 1
GAAGCCAAGGGCUCCAAGAAGGGCAAAGGCAAAAAGAAGUAAGUUCCCCAGCUAGUUUGGUGGAACUAACUUA---AAAAGAGGAAUUCAAUG-
((((((....((((......))))...)))......((((.((((((((((.....)))).)))))).)))).---..........)))....- ( -25.70)
>DroSim_CAF1 51354 90 + 1
GAAGCCAAGGGUUCCAAGAAGGGCAAGGGCAAAAAGAAGUAAGUUCCCCAACUAGUUUGGUGGAACUAACUUA---AAAAGAGGAAUUAAAUG-
...(((....((((......))))...)))......((((.((((((((((.....)))).)))))).)))).---.................- ( -23.60)
>DroEre_CAF1 50395 93 + 1
GAAGCCAAGGGCACCAAGAAGGGCAAAGGCAAGAAGAAGUAACGUUCCUAGCUGGUUUGGUGGCACUAACGUGACUAAAAAAGGAAUUACAAG-
...(((....((.((.....))))...)))........(((..((((((......((((((.((......)).))))))..)))))))))...- ( -22.30)
>DroAna_CAF1 56861 84 + 1
GAGGCUAAGGGCAGCAAGAAGGGCAAGGGCAAAAAGAAGUAAUAUGUGAUAAUAUUUUU-------CAACCUC---GAUACCGAAAUCGGAUGC
((((((....((..(.....).))...))).....((((.(((((......))))))))-------)...)))---....(((....))).... ( -15.20)
>consensus
GAAGCCAAGGGCUCCAAGAAGGGCAAAGGCAAAAAGAAGUAAGUUCCCCAACUAGUUUGGUGGAACUAACUUA___AAAAGAGGAAUUAAAUG_
...(((....((((......))))...)))................................................................ ( -5.36 =  -5.87 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:32 2006