| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 10,433,774 – 10,433,868 |
| Length | 94 |
| Max. P | 0.641272 |
| Location | 10,433,774 – 10,433,868 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 78.05 |
| Mean single sequence MFE | -21.53 |
| Consensus MFE | -11.16 |
| Energy contribution | -11.44 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.91 |
| Structure conservation index | 0.52 |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.641272 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10433774 94 - 20766785 A---------UAAACGUAAUUAAAUGUUUGCUC-UGCGGAC-AACAACUAUCAAUUGUU-----UAUUGUUUGAACAAUUGCCGCCUUAUAGAGCAAGACAUCG---AUGUCA .---------.((((((......))))))((((-(((((..-.........((((((((-----((.....)))))))))))))).....)))))..((((...---.)))). ( -24.90) >DroPse_CAF1 34575 102 - 1 AUUCAAAUUGUAAGCUUAAUUAAAUGUUUACUC-CGUUGAA-AACAAUAAUCAAUUGAU-----UAUUAUUUACACAAUUGCCGUCUUACGGGGCA-GGCAUCG---AUGUCA .........((((((..........))))))..-(((((((-((.(((((((....)))-----)))).))).......((((((((....)))).-)))))))---)))... ( -22.30) >DroEre_CAF1 35552 94 - 1 A---------UAAGCUUAAUUAAAUGUUUGCUC-UGCGGAC-AACAACUAUCAAUUGUU-----UGUUAUUUGAACAAUUGCCGCCUUAUAGGGCAAGACAUCG---AUGUCA .---------.................((((((-(((((..-.........((((((((-----((.....)))))))))))))).....)))))))((((...---.)))). ( -22.20) >DroYak_CAF1 37622 94 - 1 A---------UAAACGUAAUUAAAUGUUUGCUC-UGCGGAC-AACAACUAUCAAUUGUU-----UAUUAUUUGAACAAUUGCCGCCUUAAAAGGCAAGACAUCG---AUGUCA .---------..............(((((((..-.))))))-)........((((((((-----((.....))))))))))..((((....))))..((((...---.)))). ( -23.10) >DroAna_CAF1 42746 103 - 1 G---------CCAGCUUAAUUGAAUGUUUGCUUUUGCAGACCCACAACUAUCAAUUGUUACAAUAAUUAUUUACACAAUUGCCGCCUUAUAGAGCAAGU-AUGGGAAAUGUCA .---------(((((((..(((...((((((....))))))...)))....(((((((...(((....)))...)))))))..(((.....).))))))-.)))......... ( -16.30) >DroPer_CAF1 40837 102 - 1 AUUCAAAUUGUAAGCUUAAUUAAAUGUUUACUC-CGUUGAA-AACAAUCAUCAAUUGAU-----UAUUAUUUACACAAUUGCCGUCUUACGGGGCA-GGCAUCG---AUGUCA .(((((...((((((..........))))))..-..)))))-...(((((.....))))-----).......(((....((((((((....)))).-))))...---.))).. ( -20.40) >consensus A_________UAAGCUUAAUUAAAUGUUUGCUC_UGCGGAC_AACAACUAUCAAUUGUU_____UAUUAUUUAAACAAUUGCCGCCUUAUAGGGCAAGACAUCG___AUGUCA .........................((((((....))))))..........((((((..................))))))..((((....))))..(((((.....))))). (-11.16 = -11.44 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:26 2006