Locus 302

Sequence ID 2R_DroMel_CAF1
Location 2,028,632 – 2,028,733
Length 101
Max. P 0.604665
window623

overview

Window 3

Location 2,028,632 – 2,028,733
Length 101
Sequences 6
Columns 101
Reading direction reverse
Mean pairwise identity 81.72
Mean single sequence MFE -32.82
Consensus MFE -22.05
Energy contribution -22.47
Covariance contribution 0.42
Combinations/Pair 1.19
Mean z-score -1.59
Structure conservation index 0.67
SVM decision value 0.14
SVM RNA-class probability 0.604665
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2028632 101 - 20766785
ACACAGCGUGCACUUAAGUGUCGUCGCUCCGCCUGUGAAUGUGAGUGCAUGCACUAGCACGGGUAUCUGCAAGUACGCGUAUCUGUAGUAUCUGUAUCUUU
.....(((((((((((.......((((.......))))...)))))))))))......(((((((.(((((..((....))..))))))))))))...... ( -34.50)
>DroSec_CAF1 14199 101 - 1
ACACAGCGUGCACUUAAGUGUCGUCGCUCCGCCUGUGAAUGCGAGUGCAUGCACUAGUACGGGUAUCUGCCAGUACGCGUAUCUGUGGUAUCUGUAUCUUU
.....((((((((((..((((..((((.......))))))))))))))))))....(((((((((((...(((((....)).))).))))))))))).... ( -33.40)
>DroSim_CAF1 14106 101 - 1
ACACAGCGUGCACUUAAGUGUCGUCGCUCCGCCUGUGAAUGCGAGUGCAUGCACUAGUACGGGUAUCUGCCAGUACGCGUAUCUGUGGUAUCUGUAUCUUU
.....((((((((((..((((..((((.......))))))))))))))))))....(((((((((((...(((((....)).))).))))))))))).... ( -33.40)
>DroEre_CAF1 13663 92 - 1
ACACAGCGUGCACUUAAGUGUCGUCGCUGCGCCUGUGAAUGCGAGUGCAUGCGCGCGUACGGGUAUCUGCAAGUUCGCGUAU---------CUGUAUCUUC
.....(((((((....((((....))))((((.(((....))).)))).)))))))((((((((((..((......))))))---------)))))).... ( -32.20)
>DroYak_CAF1 17291 92 - 1
ACACAGCGUGCACUUAAGUGUCGUCGCUCUGCCUGUGAAUGCGAGUGCAUGUGCGCGUACGGGUAUCUGCAAGUACGCGUAU---------CUGUAUCUUC
..(((((((((((((..((((..((((.......)))))))))))))))))(((((((((..((....))..))))))))).---------))))...... ( -34.30)
>DroAna_CAF1 14109 86 - 1
GCACAGCGUGCAUUUAAGUGUCGUCGCUCCGCCAG------CGAGUGCAUGU--------GUGGAUCCGCAAGUACGUGUAUCUGUG-CAUCCGCAAACUU
((((..((.((((....))))))(((((.....))------)))))))...(--------((((((.((((..((....))..))))-.)))))))..... ( -29.10)
>consensus
ACACAGCGUGCACUUAAGUGUCGUCGCUCCGCCUGUGAAUGCGAGUGCAUGCACUAGUACGGGUAUCUGCAAGUACGCGUAUCUGUG_UAUCUGUAUCUUU
((...((((((((((.((((....))))..((........))))))))))))....(((((.((((......)))).)))))...........))...... (-22.05 = -22.47 +   0.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:58 2006