Locus 3003

Sequence ID 2R_DroMel_CAF1
Location 10,358,563 – 10,358,663
Length 100
Max. P 0.770532
window4958

overview

Window 8

Location 10,358,563 – 10,358,663
Length 100
Sequences 6
Columns 107
Reading direction reverse
Mean pairwise identity 76.97
Mean single sequence MFE -35.00
Consensus MFE -22.99
Energy contribution -23.93
Covariance contribution 0.95
Combinations/Pair 1.34
Mean z-score -1.42
Structure conservation index 0.66
SVM decision value 0.53
SVM RNA-class probability 0.770532
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 10358563 100 - 20766785
UAUGCGGGCAUUGUCCUGGGCGUGAGUGGAAUGAUUGGUGGAAUGCCGGGCUUCAUAUCGCCCUUCAUCGUGGGCCAACUUACUCACAAUAAUGUAAGUU-------
...((..(((((((..(((..((((((((.(((((.(((.....)))((((........))))...)))))...)).)))))))))..)))))))..)).------- ( -30.30)
>DroVir_CAF1 92101 99 - 1
UACGCGGGCAUAGUGCUCGGCGUCAGUGGCAUGAUCGGCGGCAUGCCGGGCUUUAUAUCGCCCUUCAUCGUGGGCAUAUUAACCCAGGGCAAUGUAAGU--------
...(((((((((..(((((((((..((.((.......)).)))))))))))....))).)))).....(.((((........)))).))).........-------- ( -37.40)
>DroPse_CAF1 82433 107 - 1
UAUGCGGGCAUUGUUCUGGGUGUUAGUGGCAUGAUUGGAGGCAUGCCGGGUUUCAUCUCACCCCUGAUUGUGGGUCACCUGACCCAGGGUAAUGUAAGUUUCUUCCU
...((..((((((..(((((((((((.((((((........))))))((((........)))))))))...((....))..))))))..))))))..))........ ( -39.00)
>DroWil_CAF1 125144 100 - 1
UAUGCCGGCAUAGUGUUGGGAGUAAGUGGGGCCAUUGGCGGCAUGCCGGGCUUUAUCUCACCCUUCAUUGUGGGUCUACUGACGCAAGGAAAUGUAUGUU-------
..(((...(((((((..(((.(...((((((((...(((.....))).))))))))..).)))..))))))).(((....))))))..............------- ( -31.50)
>DroAna_CAF1 77474 100 - 1
UAUGCUGGCAUUGUUCUGGGUGUGAGUGGCAUGAUUGGCGGUAUGCCUGGUUUCAUUUCGCCCUGGAUUGUGGGCCAGCUUACUAAUGACAAUGUGAGUU-------
...(((.((((((((......((((((((((((........))))))............((((........))))..))))))....)))))))).))).------- ( -32.80)
>DroPer_CAF1 82996 107 - 1
UAUGCGGGCAUUGUUCUGGGUGUUAGUGGCAUGAUUGGAGGCAUGCCGGGUUUCAUCUCACCCCUGAUUGUGGGUCACCUGACCCAGGGUAAUGUAAGUUUCUUCCU
...((..((((((..(((((((((((.((((((........))))))((((........)))))))))...((....))..))))))..))))))..))........ ( -39.00)
>consensus
UAUGCGGGCAUUGUUCUGGGUGUGAGUGGCAUGAUUGGCGGCAUGCCGGGCUUCAUCUCACCCUUCAUUGUGGGCCAACUGACCCAGGGUAAUGUAAGUU_______
...((..(((((((.((((..((((((((((((........))))))............((((........))))..)))))))))).)))))))..))........ (-22.99 = -23.93 +   0.95)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:00 2006