Locus 30

Sequence ID 2R_DroMel_CAF1
Location 1,217,523 – 1,217,619
Length 96
Max. P 0.974551
window52

overview

Window 2

Location 1,217,523 – 1,217,619
Length 96
Sequences 6
Columns 104
Reading direction reverse
Mean pairwise identity 91.69
Mean single sequence MFE -16.65
Consensus MFE -15.18
Energy contribution -14.77
Covariance contribution -0.41
Combinations/Pair 1.18
Mean z-score -1.84
Structure conservation index 0.91
SVM decision value 1.73
SVM RNA-class probability 0.974551
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 1217523 96 - 20766785
GAGAACAAAAUCAUAUAUUAGGCGUUGUCACUUUGACAUUUCGCCUGCUCUUUUACAUGGCAAUAAUCAUAAUUCAUUUUUCUCGCCUUCUCUGCC--------
(((((.............((((((.((((.....))))...))))))...........(((.......................))))))))....-------- ( -19.80)
>DroVir_CAF1 16443 104 - 1
GAAAACAUAAUCAUAUAUUAGGCGUUGUCACUUUGACAUUUCGCCUGCUCUUUUACAUGGCAAUAAUCAUAAUUCAUUUUUCUCUCGCUCUCUCGCUGCUGCGU
(((((..............(((((.((((.....))))...)))))((.(........)))................)))))...........(((....))). ( -18.30)
>DroPse_CAF1 9474 96 - 1
GAAAACAUAAUCAUAUAUUAGGCGUUGUCACUUUGACAUUUCGCCUGCUCUUUUACAUGGCAAUAAUCAUAAUUCAUUUUUCUCUCGCUCCCCAGC--------
(((((..............(((((.((((.....))))...)))))((.(........)))................)))))....(((....)))-------- ( -15.70)
>DroWil_CAF1 9933 96 - 1
GAAAACAUAAUCAUAUAUUAGGCGUUGUCACUUUGACAUUUUGCCUGCUCUUUUACAUGGCAAUAAUCAUAAUUCAUUUUUCUCUUGCUCUCUCGC--------
(((((..............(((((.((((.....))))...)))))((.(........)))................)))))..............-------- ( -13.70)
>DroAna_CAF1 9764 96 - 1
GAAAACAUAAUCAUAUAUUAGGCGUUGUCACUUUGACAUUUCGCCUGCUCUUUUACAUGGUAAUAAUCAUAAUUCAUUUUUCUCGCGCCCUCUCCC--------
(((((.............((((((.((((.....))))...)))))).........(((((....))))).......)))))..............-------- ( -16.70)
>DroPer_CAF1 9490 96 - 1
GAAAACAUAAUCAUAUAUUAGGCGUUGUCACUUUGACAUUUCGCCUGCUCUUUUACAUGGCAAUAAUCAUAAUUCAUUUUUCUCUCGCUCCCCAGC--------
(((((..............(((((.((((.....))))...)))))((.(........)))................)))))....(((....)))-------- ( -15.70)
>consensus
GAAAACAUAAUCAUAUAUUAGGCGUUGUCACUUUGACAUUUCGCCUGCUCUUUUACAUGGCAAUAAUCAUAAUUCAUUUUUCUCUCGCUCUCUCGC________
(((((..............(((((.((((.....))))...)))))((.(........)))................)))))...................... (-15.18 = -14.77 +  -0.41)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:23:55 2006