Locus 2994

Sequence ID 2R_DroMel_CAF1
Location 10,325,027 – 10,325,118
Length 91
Max. P 0.500000
window4944

overview

Window 4

Location 10,325,027 – 10,325,118
Length 91
Sequences 5
Columns 111
Reading direction forward
Mean pairwise identity 80.02
Mean single sequence MFE -20.58
Consensus MFE -11.60
Energy contribution -11.60
Covariance contribution -0.00
Combinations/Pair 1.11
Mean z-score -1.77
Structure conservation index 0.56
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 10325027 91 + 20766785
UAAAA--GUUCCAUCCUGUAACCUGCAUCUGCA------UCCUAUAUCCUUCAUCCUCUUUCACUU------------CGCAGCAAAAAGUGAUGGAUGUUUCGAAUGAAC
.....--((((.....((((...(((....)))------...))))((...(((((....((((((------------.........)))))).)))))....))..)))) ( -14.90)
>DroSec_CAF1 39418 103 + 1
UAAAA--GUUCCAUCCUGUAACCUGCAUCUGCA------UCCAACAUCCUUCAUCCUCUUUCACUUCAAGCUCUAUCUCGCAGCAAAAUGUGAUGGAUGUUUCGAGUGAAC
.....--.........(((....(((....)))------....))).............(((((((.((((((((((..(((......))))))))).)))).))))))). ( -20.30)
>DroSim_CAF1 39618 103 + 1
UAAAA--GUUCCGUCCUGUAACCUGCAUCUGCA------UCCAACAUCCUUCAUCCUCUUUCACUUCAAGCUCUAUCUCGCAGCAAAAAGUGAUGGAUGUUUUGAGAGAAC
.....--((((..((.(((....(((....)))------....))).....(((((....((((((...((((......).)))...)))))).)))))....))..)))) ( -19.70)
>DroEre_CAF1 39589 90 + 1
UCAAA--GUUCCAUCCUGUAACCUGCAUCUGCA------UCCCAUAUCCUUCAUCCUCUUUCACUUCAAGCU-------------AAAAGUGAUGGAUGAUUCCAGGGGGC
.....--...((.(((((.....(((....)))------...........((((((....((((((......-------------..)))))).))))))...))))))). ( -22.60)
>DroYak_CAF1 40571 111 + 1
AUGAAUCCUUCUACCCUGUAACCUGCAUCUGCAUCUCCAUCCUAUAUCCUUCAUCCUCUUUCACUUCAAGCUUAGUCUCGCAGCAAAAAGUGAUGGAUGAUUCGAGGGAGC
.....((((((............(((....))).................((((((....((((((...(((.........)))...)))))).))))))...)))))).. ( -25.40)
>consensus
UAAAA__GUUCCAUCCUGUAACCUGCAUCUGCA______UCCAAUAUCCUUCAUCCUCUUUCACUUCAAGCU___UCUCGCAGCAAAAAGUGAUGGAUGUUUCGAGGGAAC
.......((((............(((....)))..................(((((....((((((.....................)))))).)))))........)))) (-11.60 = -11.60 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:47 2006