Locus 2992

Sequence ID 2R_DroMel_CAF1
Location 10,312,468 – 10,312,625
Length 157
Max. P 0.913113
window4941 window4942

overview

Window 1

Location 10,312,468 – 10,312,585
Length 117
Sequences 5
Columns 117
Reading direction reverse
Mean pairwise identity 91.97
Mean single sequence MFE -32.00
Consensus MFE -26.14
Energy contribution -26.22
Covariance contribution 0.08
Combinations/Pair 1.12
Mean z-score -1.80
Structure conservation index 0.82
SVM decision value 1.09
SVM RNA-class probability 0.913113
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 10312468 117 - 20766785
CUAAGAAAUAUCGCCUAUGAUAUGGCGCCCAACAUGGGGCCCAUCAGCAUUCAUUGUUGACAUGUAACAAGGUGGGCUUAACGGGAAACCCCCUUAAUCUCUGCUAAUCUCUCCCUA
.((((.......((((((....(((.((((......)))))))((((((.....))))))...........)))))).....((....))..))))..................... ( -31.20)
>DroSec_CAF1 26884 117 - 1
GUAAGAAAUGUCGCUUAUAAUAUGGCGCCCAACAUGGGGCCCAUCAGCAUUCAUUGUUGACAUGUAACAAGGUUGGCUUAACGGGAAACCCCCUUAAUCUCUGCUAAUCUCUCCCCA
(..(((..(((..(........(((.((((......)))))))((((((.....))))))...)..))).(((((((((((.(((....))).)))).....))))))))))..).. ( -32.20)
>DroSim_CAF1 27199 117 - 1
AUAAGAAAUGUCGUUUAUGAUGUGGCGCCCAACAUGGGGCCCAUCAGCAUUCAUUGUUGACAUGUAACAAGGUGGGCUUAACGGGAAACCCCCUUAAUCUCUGCUAAUCUCUCCCCA
...(((.(((((......((((.(((.(((.....))))))))))((((.....))))))))).......((..((.((((.(((....))).)))).).)..))..)))....... ( -32.70)
>DroEre_CAF1 26988 117 - 1
AUAAGAAAUGUCGCUUACUAUAUGGCGCCCAACGAGGGGCCCAUCAGCAUUCAUUGUUGACAUGUAACAAGGUGGGCUUAACGGGAAACCCACUUAAUCUCUACUAAUCUCUCCCCU
.((((.......(((((((...(((.((((......)))))))((((((.....))))))..........))))))).....((....))..))))..................... ( -31.60)
>DroYak_CAF1 27680 116 - 1
AUAGGAAAUGUCGCUUAUGAUAUGGCGCCCAACGAGG-GCCCAUCAACAUUUACUGUUGACAUGUAACAAGGUGGGCUUAACGGGAAAGCCCCUUAAUCUCUACUAAUCUCUCCCCU
...(((..(((..(..(((...(((.((((.....))-)))))((((((.....))))))))))..))).((((((.((((.(((....))).)))).).)))))......)))... ( -32.30)
>consensus
AUAAGAAAUGUCGCUUAUGAUAUGGCGCCCAACAUGGGGCCCAUCAGCAUUCAUUGUUGACAUGUAACAAGGUGGGCUUAACGGGAAACCCCCUUAAUCUCUGCUAAUCUCUCCCCA
...(((..(((..(........(((.((((......)))))))((((((.....))))))...)..))).((((((.((((.(((....))).)))).).)))))..)))....... (-26.14 = -26.22 +   0.08)

alignment

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secondary structure

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dotplot

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Window 2

Location 10,312,505 – 10,312,625
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 88.83
Mean single sequence MFE -31.59
Consensus MFE -24.60
Energy contribution -25.00
Covariance contribution 0.40
Combinations/Pair 1.16
Mean z-score -1.94
Structure conservation index 0.78
SVM decision value 0.86
SVM RNA-class probability 0.869651
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 10312505 120 - 20766785
CUAGAUAAUACAGAUCAUAAAAUAAGCAGACACAAAACCUCUAAGAAAUAUCGCCUAUGAUAUGGCGCCCAACAUGGGGCCCAUCAGCAUUCAUUGUUGACAUGUAACAAGGUGGGCUUA
...(((.......)))......((((((((.........)))........((((((.((...(((.((((......)))))))((((((.....)))))).......))))))))))))) ( -27.90)
>DroSec_CAF1 26921 120 - 1
CUAGAUAGUAAAGAUCAUGAAAUAAGCAGCCACAAAGCCUGUAAGAAAUGUCGCUUAUAAUAUGGCGCCCAACAUGGGGCCCAUCAGCAUUCAUUGUUGACAUGUAACAAGGUUGGCUUA
...(((.......)))...........(((((....((((.......(((((.........((((.((((......)))))))).((((.....)))))))))......))))))))).. ( -29.62)
>DroSim_CAF1 27236 120 - 1
CUAGAUAAUAAAGAUCAAGCAAUAAGCAGCCACAAAGCCUAUAAGAAAUGUCGUUUAUGAUGUGGCGCCCAACAUGGGGCCCAUCAGCAUUCAUUGUUGACAUGUAACAAGGUGGGCUUA
...(((.......)))..((.....)).......((((((((.....(((((......((((.(((.(((.....))))))))))((((.....)))))))))........)))))))). ( -34.42)
>DroEre_CAF1 27025 120 - 1
CUAGACAAUUUAGAUCAUGAAAUAAGCAGCCACAAAGCCCAUAAGAAAUGUCGCUUACUAUAUGGCGCCCAACGAGGGGCCCAUCAGCAUUCAUUGUUGACAUGUAACAAGGUGGGCUUA
(((((...))))).....................((((((((......(((..(........(((.((((......)))))))((((((.....))))))...)..)))..)))))))). ( -31.80)
>DroYak_CAF1 27717 119 - 1
CUAGAUAAAUUAGGCCAUGAAAUAAGCAGCCACUAAGCCCAUAGGAAAUGUCGCUUAUGAUAUGGCGCCCAACGAGG-GCCCAUCAACAUUUACUGUUGACAUGUAACAAGGUGGGCUUA
............(((.............)))..(((((((((......(((..(..(((...(((.((((.....))-)))))((((((.....))))))))))..)))..))))))))) ( -34.22)
>consensus
CUAGAUAAUAAAGAUCAUGAAAUAAGCAGCCACAAAGCCUAUAAGAAAUGUCGCUUAUGAUAUGGCGCCCAACAUGGGGCCCAUCAGCAUUCAUUGUUGACAUGUAACAAGGUGGGCUUA
..................................((((((((.....(((((.........((((.((((......)))))))).((((.....)))))))))........)))))))). (-24.60 = -25.00 +   0.40)

alignment

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secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:45 2006