| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 10,308,615 – 10,308,725 |
| Length | 110 |
| Max. P | 0.534072 |
| Location | 10,308,615 – 10,308,725 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 81.72 |
| Mean single sequence MFE | -30.72 |
| Consensus MFE | -21.64 |
| Energy contribution | -21.53 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.32 |
| Structure conservation index | 0.70 |
| SVM decision value | 0.00 |
| SVM RNA-class probability | 0.534072 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10308615 110 + 20766785 AUAUAAGGCGAUCACGAAGUGAAAGAAGUUCGACUUGCGCAAAUUGCUGGGCGGCUGCUUUUCAAAGUGGGCGCGGCCAAUGCCCAAACUGCAAUGG-AUCAAAAAAGUAA- .........((((.((((.(......).))))..((((((.....))(((((((((((..(((.....))).))))))...)))))....))))..)-)))..........- ( -31.60) >DroVir_CAF1 32983 104 + 1 GUAGAGCGCAAUCACAAAGUGAAAGAAAUUCGAUUUGCGCAAAUUGCUGGGCGGCUGCUUUUCAAAGUGGGCGCGGCCAAUGCCAAGACUGCAAUUA-GAAG------GCG- ((...((((((((((...))))..(.....)...)))))).((((((.(((((.(..(((....)))..).)))(((....)))....)))))))).-....------)).- ( -31.40) >DroPse_CAF1 23953 105 + 1 GUACAGGGCGAUCACAAAGUGAAAGAAGUUCGAUUUACGUAAAUUGCUGGGCGGCUGCUUCUCAAAGUGGGCGCGGCCAAUGCCCAGGCUGCAAAAA-AACAGU-----A-C (((..((((..((((...)))).....))))....)))........((((((((((((..(((.....))).))))))...))))))((((......-..))))-----.-. ( -31.30) >DroGri_CAF1 33529 107 + 1 GUAAAGUGCAAUCACAAAAUGAAAGAAAUUUGACUUGCGCAAAUUGCUGGGCGGCUGCUUCUCAAAGUGGGCGCGUCCAAUGCCCAAACUGCAAUUA-GACGAA--UGGA-- .....((((((...((((.(......).))))..)))))).(((((((((((((.(((..(((.....))).))).))...)))))....)))))).-......--....-- ( -25.70) >DroMoj_CAF1 33383 103 + 1 GUAGAGCGCAAUCACAAAGUGAAAGAAAUUCGAUUUACGCAAAUUGCUGGGCGGCUGUUUCUCAAAGUGGGCGCGGCCAAUGCCCAGGCUGCAAUUA-GAAG------GA-- ((((.(((...((((...))))..(.....)......)))......((((((((((((..(((.....))).))))))...)))))).)))).....-....------..-- ( -30.00) >DroAna_CAF1 26278 109 + 1 GUAGAGAGCGAUCACGAAGUGAAAGAAGUUCGACUUUCGCAAAUUACUGGGCGGCUGCUUCUCAAAGUGGGCGCGGCCGAUGCCCAAACUGCAAUGUUAUCAAA-AAUAA-- ((((...((((...((((.(......).))))....)))).......(((((((((((..(((.....))).))))))...)))))..))))............-.....-- ( -34.30) >consensus GUAGAGCGCAAUCACAAAGUGAAAGAAAUUCGACUUGCGCAAAUUGCUGGGCGGCUGCUUCUCAAAGUGGGCGCGGCCAAUGCCCAAACUGCAAUUA_AACAAA____GA__ .......(((.((((...)))).........................(((((((((((..(((.....))).))))))...)))))...))).................... (-21.64 = -21.53 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:43 2006