Locus 2989

Sequence ID 2R_DroMel_CAF1
Location 10,304,136 – 10,304,226
Length 90
Max. P 0.698759
window4937

overview

Window 7

Location 10,304,136 – 10,304,226
Length 90
Sequences 6
Columns 92
Reading direction reverse
Mean pairwise identity 86.39
Mean single sequence MFE -26.27
Consensus MFE -20.51
Energy contribution -19.65
Covariance contribution -0.86
Combinations/Pair 1.27
Mean z-score -2.41
Structure conservation index 0.78
SVM decision value 0.35
SVM RNA-class probability 0.698759
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 10304136 90 - 20766785
CAGAGUACGA-GGUACAAACUAAUUGUUUGUUUCUGCAUCCCAUCGUAAGGAUGAUGGAUGAUUCCACGAUUCUAGCUUGU-GUCCUUUUUA
.(((((.(((-((.((((((.....)))))).))).(((((.(((((....))))))))))......))))))).......-.......... ( -22.00)
>DroSec_CAF1 18665 90 - 1
CGGAGUACGA-GGUACAAACUAAUUGUUUGUUUCUGCAUCCCACCGCAAGGAUGAUGGAUGAUUCCAGGAUUCUAGCUUGU-GUCUCUUUUU
.(((((((((-(.(((((((.....))))).((((((((((((((....)).))..)))))....)))))...)).)))))-).)))).... ( -27.80)
>DroSim_CAF1 18624 90 - 1
CGGAGUACGA-GGUACAAACUAAUUGUUUGUUUCUGCAUCCCACCGCAAGGAUGAUGGAUGAUUCCAGGAUUCUAGCUUGU-GUCCUCUUUA
.(((((...(-((.((((((.....)))))).))).(((((((((....)).))..))))))))))(((((.(......).-)))))..... ( -28.30)
>DroEre_CAF1 18734 85 - 1
CGGAGUACGG-GAUACAAACUAAUUGUUUGUUUCUGCAUCCCACCGCAAGGAUGAUGGAUGAU-----GAUUCCCGCUUGU-ACCCUCCUUA
.((.((((((-((.((((((.....)))))).))).(((((((((....)).))..)))))..-----..........)))-))))...... ( -26.40)
>DroYak_CAF1 19078 85 - 1
CGGAGUACGA-GGUACAAACUAAUUGUUUGUUUCUGCAUCCCACCGCAAGGAUGAUGGAUGAU-----GAUUCCUGCUUGU-AUCCUCUUUA
.(((.(((((-(..((((((.....)))))).....(((((((((....)).))..)))))..-----........)))))-))))...... ( -25.00)
>DroAna_CAF1 22282 86 - 1
CGGGGAAAAAGGAUACAAACUAAUUGUUUGUUUCUGCAUCCCGCCGCAAGGAUGAUGGAUGAU-----GAUUCCU-CUUGUUUUCCUCUUUC
.((((((((.(((.((((((.....)))))).))).(((((..((....)).....)))))..-----.......-....)))))))).... ( -28.10)
>consensus
CGGAGUACGA_GGUACAAACUAAUUGUUUGUUUCUGCAUCCCACCGCAAGGAUGAUGGAUGAU_____GAUUCCAGCUUGU_GUCCUCUUUA
.(((((.....((.((((((.....)))))).))..(((((((((....)).))..)))))........))))).................. (-20.51 = -19.65 +  -0.86)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:41 2006