Locus 2988

Sequence ID 2R_DroMel_CAF1
Location 10,300,454 – 10,300,546
Length 92
Max. P 0.764494
window4936

overview

Window 6

Location 10,300,454 – 10,300,546
Length 92
Sequences 6
Columns 96
Reading direction reverse
Mean pairwise identity 78.58
Mean single sequence MFE -19.63
Consensus MFE -15.90
Energy contribution -15.93
Covariance contribution 0.03
Combinations/Pair 1.05
Mean z-score -1.20
Structure conservation index 0.81
SVM decision value 0.51
SVM RNA-class probability 0.764494
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 10300454 92 - 20766785
GCGUAUCGUUGAUUUAUUGGCAUUAUUAUCAACUGCAAUAUAAAACACGAUGCGGCAGA---CAUGCAAAGAGCUCGCCAAAAGGGAGCGGC-CAG
.((((((((.(.(((((..(((...........)))...))))).)))))))))(((..---..))).....((((.((....))))))...-... ( -26.10)
>DroGri_CAF1 21726 78 - 1
GCGUAUCGUUGAUUUAUUGGCAUUAUUAUCAACUGCAAUAUAAAACAUGAUGCGGCAAC----AUGGCCAGGACCA----GGACC---------A-
.((((((((.(.(((((..(((...........)))...))))).))))))))).....----.(((((.......----)).))---------)- ( -16.80)
>DroSec_CAF1 14931 76 - 1
GCGUAUCGUUGAUUUAUUGGCAUUAUUAUCAACUGCAAUAUAAAACACGAUGCGGCAGACGACAUGCAAAGAGC--------------------AA
(((((((((.(.(((((..(((...........)))...))))).)))))))).(((.......))).....))--------------------.. ( -17.80)
>DroSim_CAF1 14908 76 - 1
GCGUAUCGUUGAUUUAUUGGCAUUAUUAUCAACUGCAAUAUAAAACACGAUGCGGCAGACGACAUGCAAAGAGC--------------------AG
(((((((((.(.(((((..(((...........)))...))))).)))))))).(((.......))).....))--------------------.. ( -17.80)
>DroYak_CAF1 15414 91 - 1
GCGUAUCGUUGAUUUAUUGGCAUUAUUAUCAACUGCAAUAUAAAACACGAUGCGGCAGA---CAUGCAAAGCGCUCGA--AAAGCACGGGGUGGUG
.((((((((.(.(((((..(((...........)))...))))).)))))))))(((..---..)))....(((((..--........)))))... ( -21.70)
>DroAna_CAF1 18870 77 - 1
GCGUAUCGUUGAUUUAUUGGCAUUAUUAUCAACUGCAAUAUAAAACACGAUGCGGCAGA---CAUGCAAAGGGGGCU----------------CUU
.((((((((.(.(((((..(((...........)))...))))).)))))))))(((..---..)))..........----------------... ( -17.60)
>consensus
GCGUAUCGUUGAUUUAUUGGCAUUAUUAUCAACUGCAAUAUAAAACACGAUGCGGCAGA___CAUGCAAAGAGC_C__________________AG
.((((((((.(.(((((..(((...........)))...))))).)))))))))(((.......)))............................. (-15.90 = -15.93 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:40 2006