| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 10,290,956 – 10,291,063 |
| Length | 107 |
| Max. P | 0.781250 |
| Location | 10,290,956 – 10,291,063 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 76.94 |
| Mean single sequence MFE | -35.36 |
| Consensus MFE | -23.06 |
| Energy contribution | -23.04 |
| Covariance contribution | -0.02 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.45 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.56 |
| SVM RNA-class probability | 0.781250 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10290956 107 - 20766785 ----U--CUCCUAAU--GCC-----AGGUGGUAAUUUCUACGCAGGUGGCCGUGGAUGGACCACUAUUGGCCAUCUCCGACAACAUGUUCGUGCAUAACAAUUCGAAGCACGGACGGAGG ----.--((((...(--(((-----....)))).......((.((((((((((((.....))))....)))))))).)).......((((((((.............)))))))))))). ( -40.32) >DroVir_CAF1 12001 108 - 1 ---CC--GUACUUUU--GCC-----AGGUCGUCAUCUCCACCCAGGUGGCCGUGGACGGACCACUGCUGGCCAUCUCGGACAACAUGUUCGUGCACAACAAUUCGAAGCACGGACGCCGC ---..--........--...-----.((.((((.......((.((((((((((((.....))))....)))))))).))..........(((((.............))))))))))).. ( -35.52) >DroGri_CAF1 8589 113 - 1 ---CU--CUAUUUCU--CCCUGCAAAGGUUGUCAUAUCCACCCAAGUGGCCGUUGAUGGACCACUGCUGGCCAUCUCGGAUAAUAUGUUUGUGCACAAUAAUUCCAAGCAUGGCAGACGC ---..--.....(((--((.(((....(((((((((.((((....))))(((..(((((.(((....)))))))).)))..........)))).)))))........))).)).)))... ( -29.90) >DroWil_CAF1 24845 113 - 1 CGUUUCCCUUUGAAU--UAC-----AGGUUGUCAUUUCCACUCAAGUGGCUGUGGAUGGGCCAUUGCUGGCGAUCUCGGAUAACAUGUUCGUUCACAACAAUUCGAAGCAUGGAAGACGU (((((((((((((((--(..-----(((((((((....(((....)))((.((((.....)))).)))))))))))(((((.....)))))........)))))))))...)).))))). ( -32.20) >DroAna_CAF1 9741 109 - 1 ----U--UUCCCAUUUAACC-----AGGUGGUCAUCUCCACACAAGUGGCCGUUGAUGGACCAUUACUGGCCAUCUCCGACAACAUGUUCGUGCACAAUAACUCGAAGCACGGACGAAGG ----.--...((((((....-----..((((......))))..)))))).((..(((((.(((....))))))))..))......(((((((((.............))))))))).... ( -32.92) >DroPer_CAF1 5258 110 - 1 CUUCU--CCCCUUUU--G-C-----AGGUGGUCAUCUCCACACAGGUGGCCGUGGACGGACCCCUGCUGGCCAUCUCCGACAACAUGUUCGUGCACAACAACUCGAAGCACGGACGGAGG ...((--((....((--(-.-----(((((((((........((((.(((((....))).)))))).))))))))).)))......((((((((.............)))))))))))). ( -41.32) >consensus ___CU__CUCCUAUU__GCC_____AGGUGGUCAUCUCCACACAAGUGGCCGUGGAUGGACCACUGCUGGCCAUCUCCGACAACAUGUUCGUGCACAACAAUUCGAAGCACGGACGAAGG .........................(((((((((..........((((((((....))).)))))..))))))))).........(((((((((.............))))))))).... (-23.06 = -23.04 + -0.02)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:38 2006