Locus 2981

Sequence ID 2R_DroMel_CAF1
Location 10,285,300 – 10,285,419
Length 119
Max. P 0.539500
window4926

overview

Window 6

Location 10,285,300 – 10,285,419
Length 119
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 88.24
Mean single sequence MFE -22.36
Consensus MFE -15.60
Energy contribution -15.88
Covariance contribution 0.28
Combinations/Pair 1.17
Mean z-score -1.80
Structure conservation index 0.70
SVM decision value 0.01
SVM RNA-class probability 0.539500
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 10285300 119 - 20766785
GGUAAUUCGGUUUGCCAAGAA-GAAAACAAACCCAAAUUACAAAAUGUACACAAAUACAAACUCACGAAAAUUCAGUCACGCACAAAACUGUGUUGGUAAACAAGCGCUAGCACGGUGCG
.((((((.((((((.......-.....))))))..))))))....((((......))))....................(((((.....(((((((((........)))))))))))))) ( -25.00)
>DroSec_CAF1 27436 117 - 1
GG---UUUAAUUUGCCAAAAAGGAAAAUAAACCGAAAUUACAAAAUGUACACAAAUACAAACUCACGAAAAUUCAGUCACGCACAAAACUGUGUUGGUAAACAAGCGCGAGAACGGUGCG
((---((((.(((.((.....))))).))))))............((((......))))....................(((((....(((((((........))))).))....))))) ( -21.70)
>DroSim_CAF1 33347 117 - 1
GG---UUUAGUUUGCCAAAAAGGAAAACAAACCGAAAUUACAAAAUGUACACAAAUACAAACUCACGAAAAUUCAGUCACGCACAAAACUGUGUUGGUAAACAAUGGCGAGAACGGUGCG
((---(((.((((.((.....)).))))))))).....(((....((((......))))..(((..((....)).((((.(((((....)))))((.....)).)))))))....))).. ( -20.20)
>DroEre_CAF1 32097 117 - 1
AA---UUCGGGUUGCCAAAAAGGAAAACAAACCCAAAUUAUAAAAUCUACACAAAUACAAACUCACGAAAAUUCAGUCACGCACAAAACAGUGCUGGCAAACGCGCACAAGCACGGUGCG
..---...(((((.((.....))......)))))...............(((.......................((((.((((......))))))))...((.((....)).))))).. ( -24.00)
>DroYak_CAF1 30626 117 - 1
AA---UUCGGCUUGCCAAAAAGGAAAACAAACCCAAAUUAUAAAAUCUACACAAAUACAAACUCACGAAAAUUCAGUCACGCACAAAACAGUGCUGGCAAACGCGCACACGCACGGUGCG
..---..((..((((((....((.........))..............................................((((......)))))))))).))(((((.(....)))))) ( -20.90)
>consensus
GG___UUCGGUUUGCCAAAAAGGAAAACAAACCCAAAUUACAAAAUGUACACAAAUACAAACUCACGAAAAUUCAGUCACGCACAAAACUGUGUUGGUAAACAAGCGCAAGCACGGUGCG
.........((((((((.................................................((....))......((((......))))))))))))..((((.......)))). (-15.60 = -15.88 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:30 2006