Locus 298

Sequence ID 2R_DroMel_CAF1
Location 1,750,945 – 1,751,055
Length 110
Max. P 0.816892
window616

overview

Window 6

Location 1,750,945 – 1,751,055
Length 110
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 72.54
Mean single sequence MFE -22.73
Consensus MFE -11.54
Energy contribution -11.43
Covariance contribution -0.10
Combinations/Pair 1.25
Mean z-score -2.18
Structure conservation index 0.51
SVM decision value 0.67
SVM RNA-class probability 0.816892
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 1750945 110 + 20766785
----------CUCUGUCUUUAAUGACAGGAGCGGAUUAUAGAAGCACAUUUCUUAUCUUAUCACUAUUUAUGUAUAUUUCACAAGUGUGACCAAGCUAAUAGUGAUAUUAGUAAAAUCUA
----------.((((((......)))))).((((((...(((((....))))).))))((((((((((...((.....((((....))))....)).))))))))))...))........ ( -24.80)
>DroSec_CAF1 17628 106 + 1
----------CUCUGUCUUUAAUGACAGGAGCGGAUUAUAAUACCACACUUCUUAUCUUAUCACU----AUGUAUAUUUCACAAGUGUGACAAAGCUAAUGGUGAUAUUAGUAAAAUCCA
----------.((((((......))))))...(((((.......(((((((.......((((...----..).)))......))))))).....(((((((....)))))))..))))). ( -23.82)
>DroEre_CAF1 18357 101 + 1
UUACAUUAUACUCUGUCUUUAAUGACA---------------AGCAGAUAUCUUAUCUUAUCGUC----ACUUAUACUUCACAAGUGUGACAAGGCUUAUAGUGGUAUUAUUAAAAUCGA
...(((((((...((((......))))---------------(((.((((........))))(((----((...............)))))...))))))))))................ ( -19.56)
>consensus
__________CUCUGUCUUUAAUGACAGGAGCGGAUUAUA__AGCACAUUUCUUAUCUUAUCACU____AUGUAUAUUUCACAAGUGUGACAAAGCUAAUAGUGAUAUUAGUAAAAUCCA
............(((((......)))))..............................(((((((.............((((....))))..........)))))))............. (-11.54 = -11.43 +  -0.10)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:51 2006