Locus 2978

Sequence ID 2R_DroMel_CAF1
Location 10,277,681 – 10,277,773
Length 92
Max. P 0.995615
window4921

overview

Window 1

Location 10,277,681 – 10,277,773
Length 92
Sequences 3
Columns 94
Reading direction reverse
Mean pairwise identity 75.74
Mean single sequence MFE -17.75
Consensus MFE -11.81
Energy contribution -11.49
Covariance contribution -0.33
Combinations/Pair 1.16
Mean z-score -2.29
Structure conservation index 0.67
SVM decision value 2.60
SVM RNA-class probability 0.995615
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 10277681 92 - 20766785
UGCUAAAUUGGGUAAAAAAAAAAAAAACAGGUGGAA--UCAAUUAAUGAAGAUUCACUUGAUACCCAAUGACUAAUCAAUUGAGAGCACAUCUU
((((..((((((((.............((((((.((--((..........)))))))))).))))))))......((....)).))))...... ( -18.04)
>DroSec_CAF1 19629 84 - 1
UGCUAGAUUGGGUAAAAA---------CAAGUGCAAAACUCUUUAAAAUUGAUUCACUUGACACCCAUUGAUUUAGCAAUUCAGAGCACACCC-
(((((((((((((.....---------(((((((((............)))...))))))..)))))...))))))))...............- ( -17.30)
>DroSim_CAF1 25449 84 - 1
UGCUAGAUUGGGUAAAAA---------CAAGUGCAAAACUCUUUAAAAUUGAUGCAUUUGACACCCAUUGACUUAGCAAUUCAGAGCACAUCC-
((((((..(((((.....---------((((((((....((.........))))))))))..))))).....))))))...............- ( -17.90)
>consensus
UGCUAGAUUGGGUAAAAA_________CAAGUGCAAAACUCUUUAAAAUUGAUUCACUUGACACCCAUUGACUUAGCAAUUCAGAGCACAUCC_
((((....(((((..............((((((((.................))))))))..))))).((......))......))))...... (-11.81 = -11.49 +  -0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:25 2006