| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 10,275,581 – 10,275,681 |
| Length | 100 |
| Max. P | 0.871370 |
| Location | 10,275,581 – 10,275,681 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 78.22 |
| Mean single sequence MFE | -18.22 |
| Consensus MFE | -13.09 |
| Energy contribution | -12.40 |
| Covariance contribution | -0.69 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.55 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.87 |
| SVM RNA-class probability | 0.871370 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10275581 100 - 20766785 ---CAUUCGGUUGCC-UUAUA--AAAAGGAUGUUUUUGUCUCUUCUUAGGGCUCAUGAAGAUUCAAAAUAUUCCUUUUGCCCCAAACUCAAAACGUUUGUUUUCCA- ---.....((.....-.....--(((((((...(((((..(((((...........)))))..)))))...)))))))....(((((.......)))))....)).- ( -20.10) >DroPse_CAF1 19074 100 - 1 ---CAAUUGUUUGCA-UUCGA--AAAAGAAUGAUUUUGACUCUUUCUAGGGCUCAUGAAGAUUCAAAAUAUUUCUUUUGCCAAAAA-ACAAAAAAUAUCAUUUCCAU ---...((((((...-.....--(((((((..(((((((.(((((...........))))).)))))))..)))))))......))-))))................ ( -16.94) >DroEre_CAF1 21411 100 - 1 ---CAUUUGGUUGCC-UUAUA--AAAAGGAUGUUUUUGUCUCUUCUUAGGGCUCAUGAAGAUUCAAAAUAUUCCUUUUGUCACGAACUCCAAACGUUUGUUUUCCA- ---..(((((.....-.....--(((((((...(((((..(((((...........)))))..)))))...)))))))..........))))).............- ( -21.05) >DroMoj_CAF1 20596 100 - 1 ---UAUUCAUUUCCA--UUUACAAAAAGAAUGUUUUUGACUCUUCUUAGGGCUCAUGAAGAUUCAAAAUAUUUCUUUUGCAAAAAAAUC-ACACAAACCUUGUUUC- ---............--(((.(((((..((((((((.((.(((((...........))))).))))))))))..))))).)))......-................- ( -15.60) >DroAna_CAF1 18111 104 - 1 AAAGAUUGUUUCGCCUUUAUA--AAAAGGAUGUUUUUGUCUCUUCUUAGGGCUCAUGAAGACUCAAAAUAUUUCUUUUGCCAAGCACUCAGAACGUAUGAUUUGUA- ...((.(((((.((.......--(((((((...(((((..(((((...........)))))..)))))...))))))))).))))).)).................- ( -18.71) >DroPer_CAF1 19028 100 - 1 ---CAAUUGUUUGCC-UUCGA--AAAAGAAUGAUUUUGACUCUUUCUAGGGCUCAUGAAGAUUCAAAAUAUUUCUUUUGCCAAAAA-ACAAAAAAUAUCAUUUCCAA ---...((((((...-.....--(((((((..(((((((.(((((...........))))).)))))))..)))))))......))-))))................ ( -16.94) >consensus ___CAUUUGUUUGCC_UUAUA__AAAAGAAUGUUUUUGACUCUUCUUAGGGCUCAUGAAGAUUCAAAAUAUUUCUUUUGCCAAAAACUCAAAACAUAUCAUUUCCA_ .......................(((((((...(((((..(((((...........)))))..)))))...)))))))............................. (-13.09 = -12.40 + -0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:25 2006