Locus 2976

Sequence ID 2R_DroMel_CAF1
Location 10,272,675 – 10,272,768
Length 93
Max. P 0.765301
window4919

overview

Window 9

Location 10,272,675 – 10,272,768
Length 93
Sequences 4
Columns 93
Reading direction forward
Mean pairwise identity 87.63
Mean single sequence MFE -22.10
Consensus MFE -14.82
Energy contribution -16.82
Covariance contribution 2.00
Combinations/Pair 1.19
Mean z-score -2.28
Structure conservation index 0.67
SVM decision value 0.51
SVM RNA-class probability 0.765301
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 10272675 93 + 20766785
AAACAAUGCAAAGUGUGCACGCCACCCUAUCUGCCCGAAAUGCCAAAGAGCGUUGCAGAAAUGGUCACACUUAAAGUUGCGACAAUAAUACAA
...((((...(((((((...((((.....(((((....(((((......))))))))))..)))))))))))...)))).............. ( -22.30)
>DroSec_CAF1 14700 93 + 1
AAACAAUACAAAGUGUGCACGCCACCUUUUCUGCCCGAAAUGCCAAAGAGCUUUGCAGAAGUGGUCACACUUAAAGUUGCGACAAUAAUACAA
...((((...(((((((...(((((...((((((...(((.((......)))))))))))))))))))))))...)))).............. ( -22.50)
>DroSim_CAF1 16613 93 + 1
AAACAAUACAAAGUGUGCACGCCACCUUUUCUGCCCGAAAUGCCAAAGAGCUUUGCAGAGUUGGUCACACUUAAAGUUGCGACAAUAAUACAA
...((((...(((((((......(((..((((((...(((.((......)))))))))))..))))))))))...)))).............. ( -20.00)
>DroYak_CAF1 16785 93 + 1
AAACAAAGCGAAGUGUGCACGUCGCUUUUUGUGCCCGAAAUGCCAAAAAGAGUUAUUGAUGUGGUCACACUUAAAUACGCGAAAAUAAUACAA
.......((((((((((((((((((((((((.((.......)))))))))......)))))))..))))))).....)))............. ( -23.60)
>consensus
AAACAAUACAAAGUGUGCACGCCACCUUUUCUGCCCGAAAUGCCAAAGAGCGUUGCAGAAGUGGUCACACUUAAAGUUGCGACAAUAAUACAA
...((((...(((((((...(((((...((((((....(((((......)))))))))))))))))))))))...)))).............. (-14.82 = -16.82 +   2.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:24 2006