Locus 2972

Sequence ID 2R_DroMel_CAF1
Location 10,247,863 – 10,247,961
Length 98
Max. P 0.518357
window4914

overview

Window 4

Location 10,247,863 – 10,247,961
Length 98
Sequences 6
Columns 112
Reading direction forward
Mean pairwise identity 78.61
Mean single sequence MFE -24.63
Consensus MFE -15.09
Energy contribution -15.73
Covariance contribution 0.64
Combinations/Pair 1.12
Mean z-score -1.39
Structure conservation index 0.61
SVM decision value -0.03
SVM RNA-class probability 0.518357
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 10247863 98 + 20766785
AUCGUCGAAACUUUUGCCAUAGCUCGAACAUAAUUAUAAAAGUUUCGACAAGUAUUUGCCCAGGUGGGC------------CAGUGUUCGUGCAAAAAAUAAGUCGAA--GA
...(((((((((((((....................)))))))))))))...((((.((((....))))------------.))))((((.((.........))))))--.. ( -23.95)
>DroPse_CAF1 69876 104 + 1
GUGGCUAAAACUUUUGCCAUUGCUCGAACAUAAUUAUAAAAGUUUCGACAAGUAUUUGGCCAGGUGGGCAA---GGA---GCAGU-UCCACACAGAA-ACAAAACGAAACGG
(((((..........))))).....................((((((....((.(((((((.....)))..---(((---(...)-)))...)))).-))....)))))).. ( -21.60)
>DroEre_CAF1 81261 107 + 1
AUCGUCGAAACUUUUGCCAUAGCUCGAACAUAAUUAUAAAAGUUUCGACAAGUAUUUGCCCAGGUGGGCCA---ACACAGCCAGUGUUCGGGCAAAAAACAGGUUGUA--GA
...(((((((((((((....................))))))))))))).....(((((((.((....))(---((((.....))))).)))))))............--.. ( -30.95)
>DroYak_CAF1 78255 110 + 1
AUCGUCGAAACUUUUGCCAUAGCUCGAACAUAAUUAUAAAAGUUUCGACAAGUAUUUGCCCAGGUGGGCCAGCAACGCAGCCAGUGUUCGUGCAAAAAAUAAGUUGAA--GA
.(((((((((((((((....................)))))))))))))...(((((((((....))))..(((((((.....))))...)))...)))))....)).--.. ( -26.95)
>DroAna_CAF1 78122 89 + 1
AUCGUCGGAACUUUUGCCAUAGCUCGAACAUAAUUAUAAAAGUUUCGACAAGUAUUUGCCCAGGUGGGCUA---G-----------CUCUUGCAAAAAACAAA---------
...(((((((((((((....................)))))))))))))..((.(((((((....))))..---(-----------(....)).))).))...--------- ( -22.75)
>DroPer_CAF1 67384 104 + 1
GUGGCUAAAACUUUUGCCAUUGCUCGAACAUAAUUAUAAAAGUUUCGACAAGUAUUUGGCCAGGUGGGCAA---GGA---GCAGU-UCCAUACAGAA-ACAAAACGAAACGG
(((((..........))))).....................((((((....((.(((((((.....)))..---(((---(...)-)))...)))).-))....)))))).. ( -21.60)
>consensus
AUCGUCGAAACUUUUGCCAUAGCUCGAACAUAAUUAUAAAAGUUUCGACAAGUAUUUGCCCAGGUGGGCAA___G_A____CAGU_UUCGUGCAAAAAACAAAUCGAA__GA
...(((((((((((((....................)))))))))))))........((((....))))........................................... (-15.09 = -15.73 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:19 2006