| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 10,245,264 – 10,245,357 |
| Length | 93 |
| Max. P | 0.957310 |
| Location | 10,245,264 – 10,245,357 |
|---|---|
| Length | 93 |
| Sequences | 5 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 72.42 |
| Mean single sequence MFE | -20.50 |
| Consensus MFE | -12.68 |
| Energy contribution | -12.96 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.89 |
| Structure conservation index | 0.62 |
| SVM decision value | 1.48 |
| SVM RNA-class probability | 0.957310 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10245264 93 + 20766785 AUGAUGAAGAUGCUUCAUUCCCACUCC----GGGGAUUGGAUUUCUCACCGAAAUCCGGCUCCAUUUUGCUUCAGAGUCCGCCACCCCC---CACAUC-CA ..(((((((...)))))))........----((((...(((((((.....)))))))(((...((((((...))))))..)))...)))---).....-.. ( -27.20) >DroSec_CAF1 73944 80 + 1 AUGAUGAAGAUGCUUCAUUCCCACUCC----GGGGAUUGGAUUUCCCACCCAGAUCCGGCUCCAUUU-G------------CCAGCCCA---CACUUC-CA ..(((((((...)))))))........----(((....((((((.......))))))(((.......-)------------))..))).---......-.. ( -18.90) >DroSim_CAF1 75865 93 + 1 AUGAUGAAGAUGCUUCAUUCCCACUCC----GGGGAUUGGAUUUCCCACCCAGAUCCGGCUCCAUUU-GCUUCAGAGCCCGCCAUCCCA---CACUCCACA ..(((((((...)))))))........----.(((((.((((((.......))))))(((((.....-......)))))....))))).---......... ( -22.40) >DroEre_CAF1 78656 95 + 1 AUGAUGAAGAUGCUUCAUUCCCACUCC----GGGAAUUGGAUUUCCCACCCGAAACCGGCUCCAUCU-GCCCCAGAGCCCACCAACCCAUCCCACUGC-CA ..(((((((...)))))))........----((((...((.((((......))))))(((((.....-......)))))..........)))).....-.. ( -20.80) >DroAna_CAF1 76026 77 + 1 AUGAUGAAGAUGCUUCAUUUCCACUCCCCCUGCGGAUUGGAUUUCCUGC-GAAUCCCGGCCCUCCUC--------AUUCACCCACC--------------- ..(((((((...)))))))((((.(((......))).))))........-((((...((....))..--------)))).......--------------- ( -13.20) >consensus AUGAUGAAGAUGCUUCAUUCCCACUCC____GGGGAUUGGAUUUCCCACCCAAAUCCGGCUCCAUUU_GC__CAGAGCCCGCCACCCCA___CACUUC_CA ..(((((((...)))))))............((((.((((((((.......))))))))))))...................................... (-12.68 = -12.96 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:17 2006